UFO01792.5prime Sequence
1156 bp (983 high quality bases) assembled on 2008-10-27
> UFO01792.5prime
CAGTCGACATGGATGCCAGTGTAGTGGAGAATGCTCCTAATCAAAAGGAG
GTAGATGGCAAAATGGCTACAACGGAGGAGTCCGAAAAGCCATCGAACAG
CATTGGACTGCTGCCCATTATGATATTTCTGGCGGCGACAGTGGCCACGG
CCGTGGTGGTGGAGGTGCTGCCCCATGCCAGCAGAGTCTTCCCCTGGAAG
TTAGCAGATTCTTCAGCGGATCAGCTGCAGCCACCGCCCACATATGCGAT
CTTTGGTCGCAGTCCCACGGAGGAGCACCTGGTGCATGTGGTCAATGTGC
TGCACAAGTTTGGCTATAAAAGAGTGGGAGTTAACGATAGCTGGAATCTC
TTGTGGGCCCACGACTATCCATTTCTTTCGTTCGCCAATCTCAAGAATCT
CGGACAGCATCAGGTGGTGAACCATTACCCAGGCTGCGGTTACCTAACTA
ACAAGGTGGACCTATGCACCACCCAGTTGCCCTTTCTACCGCGTGCCTTT
CGATTGCCAGCGGAACGGGAGGAGTTCCTGGACTACGCCAGGGAGAATCC
CCAGGCACTGTTCGTCCAGAAGCACAACGAGCATCGGCACATTAAGGTGC
GCGCTCCCGCTGACATTGCCTTCGGATCGAACGACTCCTTTGTCCAGGAA
TTCGTGCAGCGACCCTATCTGGTGGATGGCCACAAGTTCGACATCGGCGT
CTATGTAGTCATTACCTCGGTTAATCCTTTGCGAGTCTACATCTACACGG
GCGACGTTCTGTTCCGGTATTGCCCGGTGAAATACCATCCCTTCGATGCC
GAGAATGTGGACAAGTACATTGTGGGGGATGACTATTTACCCACCTGGGA
GGTTCCTTCGCTGCGCAAGTACTACAATCGCTTTGGCGGCAGCATGCGCA
CCGTTTTTGAGCCTATGTCCGAGATCAAGGCAAGGATCCCGCCCAGATTT
GGCCTCAGTGAGCACATAGTACGCACCACGATTGCGTCCAGGAGAGGACA
TCGTAACATACTGCATCTACGACTCACACCTTTTCGATTGATGCGATCGA
TTGGTTATGACGAGATCTGGAAGTTTTTCTCATGAGCAACGGTCTCCATC
TTCCTGCCAGTCAGTCATCCGTGTTCGAACAGATCTATACAGCGGGTAAC
TTTGCT
UFO01792.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4089-RA | 2022 | CG4089-RA | 94..1185 | 9..1084 | 4995 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10815502..10816432 | 63..990 | 4480 | 99.2 | Plus |
| 3R | 32079331 | 3R | 10815381..10815434 | 9..62 | 270 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:53:12 has no hits.
UFO01792.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:07:51 Download gff for
UFO01792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4089-RA | 85..1182 | 1..1084 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:16 Download gff for
UFO01792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4089-RA | 88..1185 | 1..1084 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:32:51 Download gff for
UFO01792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4089-RA | 88..1185 | 1..1084 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:32:51 Download gff for
UFO01792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10815375..10815434 | 1..62 | 95 | -> | Plus |
| 3R | 10815502..10816539 | 63..1084 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:16 Download gff for
UFO01792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6641097..6641156 | 1..62 | 95 | -> | Plus |
| arm_3R | 6641224..6642261 | 63..1084 | 97 | | Plus |
