UFO01796.5prime Sequence
1060 bp (747 high quality bases) assembled on 2008-10-27
> UFO01796.5prime
CAGTCGACATGGATCGGGAGCTGAACGGGGCGATGAAGAGCGTGTCCATA
AATAGCGCCCAACTGAATGGTCACAATAACGGTGGCGGGCTAGATGAAAC
GGACCGCGTGGGCGTGGCACAGGGGGCGGCACTGAGTGCAACAGAGAAAA
TTACAACAACGACGGCGGCAGCTACAAAATCAGCGACAGCGACCACAAAT
GCAACCACAGCAACAGCCACAACCACAAATCTTACAACTCACAGCCCGCA
GCAAATTGCACTCTTATCCGCTGCAGAGAAAAGTAAGATGGTGCACGAGT
TATGTCAGCAGCTGCTTCTAACGGACGAACAGGTGCAGGAGCTGTGCTAC
CGCATCCTGCACGAGCTGCGCCGCGGCCTGGCCAAGGATACACATCCCAA
GGCGAATGTCAAGTGCTTCGTAACGTATGTGCAGGATCTGCCCAATGGCA
ATGAGCGTGGCAAGTTCTTGGCCTTGGATCTGGGTGGCACCAACTTCCGG
GTGCTGCTCATCCATCTGCAGGAGAACAACGATTTTCAAATGGAGTCCCG
CATCTATGCCATACCGCAGCACATTATGATTGGATCGGGTACACAGCTAT
TCGATCACATCGCCGAATGTCTGTCCAACTTTATGGGCCGAGCACAATGT
GTACAAGGAGCGTTTGCCACTCGGTTTCACCTTCTCGTTCCCGCTGCGCC
ATTGGGTCTGACCAGGGCCTGCTGGAGACCTGACCAAGGGCTTCACTGCG
CTGGCGTCGTCACGAGATTGTTGTCCAGTTGCTAAAGGATGCCATCGCAC
GGCGCGGCGATGTCCAAGATCGGATGGTGGTGTGCCATACTCATGACCCC
CCTGCACGCTGATGGCTGCGCCTGAAGAATCCAACCTGCAGATCGTTGAT
TGCCGCACGGTGCAAATGGCTGCTTATGGACGGTGTGGAGGAGGCGAACC
TTCGCCGGCGAAGATCCGCGCAGAGACACGGCTCTGATCCACACCGGATG
GGCCATCCAGGACATGGCCATTGGAACTTGGGGCACGAATTTCGTCTCGG
AATCTATGTG
UFO01796.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hex-A-RC | 4139 | CG3001-RC | 545..1550 | 9..1002 | 4160 | 95.8 | Plus |
| Hex-A-RB | 2512 | CG3001-RB | 330..1335 | 9..1002 | 4160 | 95.8 | Plus |
| Hex-A-RA | 2512 | CG3001-RA | 330..1335 | 9..1002 | 4160 | 95.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9586219..9587030 | 9..816 | 3735 | 99 | Plus |
| 3R | 32079331 | 3R | 26450890..26451020 | 375..505 | 250 | 79.4 | Plus |
| 2R | 25286936 | 2R | 15220031..15220147 | 509..393 | 210 | 78.6 | Minus |
Blast to na_te.dros performed 2014-11-28 22:27:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2290..2575 | 124..407 | 191 | 58.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2466..2654 | 154..344 | 176 | 56.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2409..2494 | 139..227 | 168 | 67.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1512..1589 | 148..225 | 156 | 66.7 | Plus |
UFO01796.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:08:00 Download gff for
UFO01796.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hex-A-RB | 335..1310 | 9..972 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:48 Download gff for
UFO01796.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hex-A-RA | 330..1305 | 9..972 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:56 Download gff for
UFO01796.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hex-A-RA | 330..1305 | 9..972 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:56 Download gff for
UFO01796.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9586219..9587194 | 9..972 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:48 Download gff for
UFO01796.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9480252..9481227 | 9..972 | 96 | | Plus |
