UFO01802.5prime Sequence
1134 bp (1010 high quality bases) assembled on 2008-10-31
> UFO01802.5prime
CAGTCGACATGGATAACATAGTCTACGACTTTGCCAAGATCACGTTTCAA
GCAAAAGACAACAGGTCACCCACTACTAACTCGAATCTGTCGTGGCAACT
AAATCAGATGGCCTTGTCGGACATGGAGGAGATGCAGGACACATCCGAGC
CCATAGCTCCACCCGAATCCGATGACAATGTCAGCAGTGAATCGCATGAC
TCCGACGATGTAGACTCGCAATTGAGTCGCTGCGAGGACAACGATGACGA
CAGCGATTGCATCAGTGGATCCTCCAGACGCAGTTCCACTTTTGGAGCTC
GAGCGGGCGTGGCTCGTCGCAGAATGCCCGCCAGGGTGTCCAAGGACAAC
TTTAACCGGATCTGCAGCGCCATCATGAAACCCATCAAAAAGAAGCAACG
CAAAGAACTGAACACAAATGCCCAAACACTTAAAAGCATCGAAAAGATCT
ACACCAGCAGGCGCATGAAAAAGTTCACGCCCACCAATCTGGAGACAATC
TTCGAGGAACCCAGCGATGAGAATGCCGCCGATGCAGAGGACGACAGCGA
AGAGTGCTCCATCAGCAGCCAAGTGAAAGTAGTTAAGGTGTGGGGTCGCA
AACTCCGCCGGGCAATATCCTTCAGCGATGGCCTGAACAAGAACAAAATC
CTGTCGAAGAGACGCCGCCAGAAGGTGAAGAAGACCTTTGGCAAGCGTTT
CGCACTCAAGAAAATCTCCATGACCGAGTTCCACGATCGTCTGAATAAGA
GCTTCGACAGTGCCATGCTGGAGGGGGATGATGCAGAGGCGGGAGGATCG
GCGGAGGCCGTCAACATCCCCAAGACATCCATGACCATGGAAGACATACA
GCTGCCGACAATGAGCAGCCAGCACCAGTTCCTCATGCAACCGGCGGGCT
TTGAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGT
GGTCATATCATAATCATAATCATAATCATAATCACACTAGCTAGGAGATC
TGTCATGACTAGTGCTTGGATCTCACAATAAAAACGCCGGCGGCACGAGC
GTCTGAACAATCGGATGGGAGTTCTGAGGTCATTTACTGATCTATCACAG
GAGTCAGCGGAGCTCGAATCCAATTAGGCCTGGC
UFO01802.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tan-RB | 1657 | CG6586-RB | 316..1212 | 9..905 | 4485 | 100 | Plus |
| tan-RA | 1494 | CG6586-RA | 316..1212 | 9..905 | 4485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6055714..6056557 | 62..905 | 4220 | 100 | Plus |
| 3L | 28110227 | 3L | 6055608..6055665 | 9..66 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:35:30 has no hits.
UFO01802.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:05:30 Download gff for
UFO01802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tan-RA | 274..1170 | 9..905 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:21 Download gff for
UFO01802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tan-RA | 316..1212 | 9..905 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:12 Download gff for
UFO01802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tan-RA | 316..1212 | 9..905 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:12 Download gff for
UFO01802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6055608..6055663 | 9..64 | 100 | -> | Plus |
| 3L | 6055717..6056557 | 65..905 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:21 Download gff for
UFO01802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6048708..6048763 | 9..64 | 100 | -> | Plus |
| arm_3L | 6048817..6049657 | 65..905 | 100 | == | Plus |
