Clone UFO01811 Report

Search the DGRC for UFO01811

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:18
Well:11
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG5973-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO01811.5prime Sequence

1112 bp (1012 high quality bases) assembled on 2008-10-31

> UFO01811.5prime
CAGTCGACATGGGCAAGGCAGAGTGCATTAGCTACGATGAGCACAAGTTG
CCCTACATCGATCTGGGCTCGGCACAGATCCGCATGGAGAAGGAACAAGC
GCCGGAATGGGCACTGAAGAAGGCACAGGATGAGTTGCGGGAAGTGCCCG
GCGTCAAGGAGCAGGCCATCAAGGAACTCAGGGAACTCATTCAAAATGAA
AAGTACCTGAACCTGCCATTGGATGATGAGTATATGATGATGTTCCTGCG
TCCCACCCATTACTATCCAGAAAGTGCCTTGAAAAGGCTCAAGAACTTTT
ATCACATGAAATTGAAGTATGGAGCCGCTTGCGAGAACATAATCCCCAGC
AAGTTGAGAAACGTTTTCGAGGCAAATATTCTGAATTTGCTGCCCCAAAG
AGATCAACACGGCCGTCGGCTTTTGGTGCTGGAAGCTGGCAAAAAATGGA
AGCCATCGCAAGTGCCCTTGGTGGATCTATTCCGCGGCATTCAATTGACC
GTACTGGGTTCTATGGTGGAGCCCTACTCACAAATTTGCGGCTCAGTTGT
CATTATCGATATGGAAGGGCTGCCACTTAGCCACATTACACAATTTACAC
CGTCATTTGCCGCCATGTTGCTGGATTACATTCAAGAATGCATCTGCATG
CGTTTGAAAGCAGTTCACATAGTGAATAATTCATATATATTCAATATGCT
CTTTGCCGTATTCAAGCCATTCATTCGCGAAAAGCTGCGCAAGAGGATCT
TCTTCCATGGCAAGGACTACAAGTCCCTGATCTCCCATATTGAGGCGAAG
GCTTTGCCTCCGAAATACGGTGGTTCTGCCACATGGGAACTGCCACACGG
CAAAGTTTTGGGCGAATTCTTTGAGTGCTATTCCAAGGATTATGAACTGG
CTGACAGCTATGGGTATACTGAGGGTATAAGATGAGAAGGCAGCTTTCTA
GACCATTCGTTTGGCGCGCGGGCCCAGGTAGTGGTCATATCATATCATAA
TCATATCATATCACACTAGGCCTAAGGAAATCCTGGTCATGACTAGTGCT
TGGATTCTCACCAATAAAAACGCTCCGCGGCCACACGGACGTCTGAACAA
ATCGAAGGGAGT

UFO01811.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG5973-RF 1463 CG5973-RF 231..1159 8..935 4620 99.9 Plus
CG5973-RE 2204 CG5973-RE 359..1287 8..935 4620 99.9 Plus
CG5973-RG 1313 CG5973-RG 81..1009 8..935 4620 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7443645..7443832 8..195 940 100 Plus
2L 23513712 2L 7444463..7444643 566..746 905 100 Plus
2L 23513712 2L 7444059..7444213 287..441 775 100 Plus
2L 23513712 2L 7444708..7444859 746..897 760 100 Plus
2L 23513712 2L 7444273..7444399 442..568 635 100 Plus
2L 23513712 2L 7443894..7443985 196..287 460 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:32:55 has no hits.

UFO01811.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:05:34 Download gff for UFO01811.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5973-RC 86..1024 1..939 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:27 Download gff for UFO01811.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5973-RD 1693..2631 1..939 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:09 Download gff for UFO01811.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5973-RG 76..1014 1..939 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:09 Download gff for UFO01811.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7443640..7443832 1..195 97 -> Plus
2L 7443894..7443985 196..287 100 -> Plus
2L 7444060..7444213 288..441 100 -> Plus
2L 7444273..7444398 442..567 100 -> Plus
2L 7444465..7444643 568..746 100 -> Plus
2L 7444709..7444859 747..897 100 -> Plus
2L 7444927..7444970 898..939 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:27 Download gff for UFO01811.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7443894..7443985 196..287 100 -> Plus
arm_2L 7444060..7444213 288..441 100 -> Plus
arm_2L 7444273..7444398 442..567 100 -> Plus
arm_2L 7443640..7443832 1..195 97 -> Plus
arm_2L 7444465..7444643 568..746 100 -> Plus
arm_2L 7444709..7444859 747..897 100 -> Plus
arm_2L 7444927..7444970 898..939 95   Plus