UFO01811.5prime Sequence
1112 bp (1012 high quality bases) assembled on 2008-10-31
> UFO01811.5prime
CAGTCGACATGGGCAAGGCAGAGTGCATTAGCTACGATGAGCACAAGTTG
CCCTACATCGATCTGGGCTCGGCACAGATCCGCATGGAGAAGGAACAAGC
GCCGGAATGGGCACTGAAGAAGGCACAGGATGAGTTGCGGGAAGTGCCCG
GCGTCAAGGAGCAGGCCATCAAGGAACTCAGGGAACTCATTCAAAATGAA
AAGTACCTGAACCTGCCATTGGATGATGAGTATATGATGATGTTCCTGCG
TCCCACCCATTACTATCCAGAAAGTGCCTTGAAAAGGCTCAAGAACTTTT
ATCACATGAAATTGAAGTATGGAGCCGCTTGCGAGAACATAATCCCCAGC
AAGTTGAGAAACGTTTTCGAGGCAAATATTCTGAATTTGCTGCCCCAAAG
AGATCAACACGGCCGTCGGCTTTTGGTGCTGGAAGCTGGCAAAAAATGGA
AGCCATCGCAAGTGCCCTTGGTGGATCTATTCCGCGGCATTCAATTGACC
GTACTGGGTTCTATGGTGGAGCCCTACTCACAAATTTGCGGCTCAGTTGT
CATTATCGATATGGAAGGGCTGCCACTTAGCCACATTACACAATTTACAC
CGTCATTTGCCGCCATGTTGCTGGATTACATTCAAGAATGCATCTGCATG
CGTTTGAAAGCAGTTCACATAGTGAATAATTCATATATATTCAATATGCT
CTTTGCCGTATTCAAGCCATTCATTCGCGAAAAGCTGCGCAAGAGGATCT
TCTTCCATGGCAAGGACTACAAGTCCCTGATCTCCCATATTGAGGCGAAG
GCTTTGCCTCCGAAATACGGTGGTTCTGCCACATGGGAACTGCCACACGG
CAAAGTTTTGGGCGAATTCTTTGAGTGCTATTCCAAGGATTATGAACTGG
CTGACAGCTATGGGTATACTGAGGGTATAAGATGAGAAGGCAGCTTTCTA
GACCATTCGTTTGGCGCGCGGGCCCAGGTAGTGGTCATATCATATCATAA
TCATATCATATCACACTAGGCCTAAGGAAATCCTGGTCATGACTAGTGCT
TGGATTCTCACCAATAAAAACGCTCCGCGGCCACACGGACGTCTGAACAA
ATCGAAGGGAGT
UFO01811.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5973-RF | 1463 | CG5973-RF | 231..1159 | 8..935 | 4620 | 99.9 | Plus |
CG5973-RE | 2204 | CG5973-RE | 359..1287 | 8..935 | 4620 | 99.9 | Plus |
CG5973-RG | 1313 | CG5973-RG | 81..1009 | 8..935 | 4620 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7443645..7443832 | 8..195 | 940 | 100 | Plus |
2L | 23513712 | 2L | 7444463..7444643 | 566..746 | 905 | 100 | Plus |
2L | 23513712 | 2L | 7444059..7444213 | 287..441 | 775 | 100 | Plus |
2L | 23513712 | 2L | 7444708..7444859 | 746..897 | 760 | 100 | Plus |
2L | 23513712 | 2L | 7444273..7444399 | 442..568 | 635 | 100 | Plus |
2L | 23513712 | 2L | 7443894..7443985 | 196..287 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:32:55 has no hits.
UFO01811.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:05:34 Download gff for
UFO01811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5973-RC | 86..1024 | 1..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:27 Download gff for
UFO01811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5973-RD | 1693..2631 | 1..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:09 Download gff for
UFO01811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5973-RG | 76..1014 | 1..939 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:09 Download gff for
UFO01811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7443640..7443832 | 1..195 | 97 | -> | Plus |
2L | 7443894..7443985 | 196..287 | 100 | -> | Plus |
2L | 7444060..7444213 | 288..441 | 100 | -> | Plus |
2L | 7444273..7444398 | 442..567 | 100 | -> | Plus |
2L | 7444465..7444643 | 568..746 | 100 | -> | Plus |
2L | 7444709..7444859 | 747..897 | 100 | -> | Plus |
2L | 7444927..7444970 | 898..939 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:27 Download gff for
UFO01811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7443894..7443985 | 196..287 | 100 | -> | Plus |
arm_2L | 7444060..7444213 | 288..441 | 100 | -> | Plus |
arm_2L | 7444273..7444398 | 442..567 | 100 | -> | Plus |
arm_2L | 7443640..7443832 | 1..195 | 97 | -> | Plus |
arm_2L | 7444465..7444643 | 568..746 | 100 | -> | Plus |
arm_2L | 7444709..7444859 | 747..897 | 100 | -> | Plus |
arm_2L | 7444927..7444970 | 898..939 | 95 | | Plus |