UFO01815.5prime Sequence
1138 bp (1032 high quality bases) assembled on 2008-10-31
> UFO01815.5prime
CAGTCGACATGACCACCTCAACCCGCAGCAGCAGCAACAACCACAGCAGC
GAGCACGAGGAGCGAACCTCCAACGGCACCACCGCCTACAACCACCACAG
TCCAACGGGTTCGGGATCCGGAACAGCAGGCGCCTCTATTGGATCCACCA
ACCGAGTGATGCAGGCGGACGAGGACTTCAACATCCGCTTCGTCAACCTG
GTGCGCACCCACAAGTGTCTCTACGACAAGAAGGTGCCCGAGTACCGCAA
CAGGGATAATCAGGAAAAGGCTTGGGTGCTTATTTCAAAGGAGACAAGAG
AAAGCGTGATCCATTGCAAGGAGCGATGGCGAAACCTTCGGGCCTGCCTA
TCCCGCTACATAAAGCAGCAATCCGGATCGGAGCCGCAGCACAAGCCATA
CTACCTGACCGAGCACATGGCGTTCCTGCTGCCCTTCCTGAAGTCCAGCC
GTAACTCTTTGGAGGGGAACAACAGTCTGGCCACTCTGTACCAGATGTCC
CAGCAGCATTTGCAGCATCAACCATTTCTCCTGCATCCAGCACTCCATGC
GACCGAGGAGCACAAGTACTGCGCCAACACTAGCATCAATAATAATAATA
ATAACAACGACGTCCATAATGGTGAGAGTATGGAGGTCTTGGAGATGAAG
TACTCGATATCGGAGAAGGACGATGAGGAGACCATCGACGCCTTTGATCC
CGCGGTTACCAACACCCTGGGTATGAATCGTACTTCGTCCACGCCCACTC
GCAGTTCTGCCCTTCAAGGAGGCGGAGGCAATTCACCGGCCAGAAGCGAT
ACCGCTAGTGCGGATAGCATGAAAAACTTCATTCCAGATGTGCAGCTGGC
CGAGACGGGCTCGCAACTCATCTACAGCGATGGTGGACATGGCACACCAC
CGCCTCTGCACTACCATCCGCACTCGCATCCACATCCTTTGACATTGTCC
ATGGATCATCACCCAGCATCCTACGAACCGGGGAGCACGAAAAGAATCAA
GACGATGCGAGCCACCAGCACGATGACGAATGCAGAGTATTTACGCGGAC
TGCTCGTCGGAGTGGCGACTGAGTCCTCCGCCAGCATCTTCCGATCTGCG
ACTCTCACTCAAGCAACGTCGCAGGTCAAGAATGGCAA
UFO01815.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:15:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3838-RB | 3091 | CG3838-RB | 1177..2323 | 9..1137 | 5195 | 97.8 | Plus |
| CG3838-RA | 2256 | CG3838-RA | 342..1488 | 9..1137 | 5195 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:15:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9571955..9572687 | 306..1035 | 3550 | 99.6 | Plus |
| 2L | 23513712 | 2L | 9571509..9571754 | 9..254 | 1230 | 100 | Plus |
| 2L | 23513712 | 2L | 9571838..9571894 | 250..306 | 285 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:15:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6836 | 12..133 | 156 | 62.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6898 | 26..129 | 153 | 65.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6818..7027 | 13..229 | 150 | 55.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2431 | 8..99 | 143 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2433..2527 | 2..99 | 140 | 63.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1054..1141 | 16..100 | 135 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2805..2887 | 26..99 | 125 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1535..1585 | 4..55 | 122 | 73.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6914 | 26..133 | 120 | 60.6 | Plus |
UFO01815.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:05:26 Download gff for
UFO01815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3838-RB | 1123..2160 | 1..1035 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:09 Download gff for
UFO01815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3838-RA | 334..1371 | 1..1035 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:39 Download gff for
UFO01815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3838-RA | 334..1371 | 1..1035 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:39 Download gff for
UFO01815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9571501..9571753 | 1..253 | 98 | -> | Plus |
| 2L | 9571842..9571894 | 254..306 | 100 | -> | Plus |
| 2L | 9571956..9572687 | 307..1035 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:09 Download gff for
UFO01815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9571501..9571753 | 1..253 | 98 | -> | Plus |
| arm_2L | 9571842..9571894 | 254..306 | 100 | -> | Plus |
| arm_2L | 9571956..9572687 | 307..1035 | 99 | == | Plus |
