UFO01820.5prime Sequence
1140 bp (1019 high quality bases) assembled on 2008-10-31
> UFO01820.5prime
CAGTCGACATGCACTGTAGTGGACCGTTGGCCGGGCTTACCGCTCTACTG
ACGCTGGTGGCATTTCCTGTCCAGATTAAGACCGATTCCACGGTTTCCAC
GGAGCTCTACGGCGACATAGAGAATACGGAGTACGGCGATTTTGAGTCAC
TAAGTCAAACTCGCGAGCGTCAGCAACATCTGTGCCATCGCGAGGTGCCT
TCTGTGTTTTTCCAAACCGAGCGGGATTCCCCGGTGCGTGGTAATGGATC
CACGATCTACTTCCATCGCATAGAGGTCTGTTGTGCAGGCTACCGTCGCG
ATCCGTATGCCAATGAATGTGTGCCGGACTGCTCCGCATCTTCGCCAGAC
AACTGCCGTAATGGCTTCTGTCGCAGTCCTGGCGTTTGCGAGTGCTTCGC
AGAGTTTGTCCGTAACGAACATGGTGCCTGTATTCACACCTGTCCGATTG
CCTGTCAGCATGGCAGATGTTATTTAAATGGCACCTGTGTCTGCCATCAG
AACTTTGTCCTGGATCAGGAGACCCGGCAGTTCTGCCGGCCGAAGTGTTC
GCAGTCATGTGGCACCCATGAGGAGTGTGTGGCGCCCGGCCAGTGCGACT
GCTCACCCGGCTACCGGAGAACGCCGGACTTGGGATGCCAACCGGTTTGT
GCTCCGGACTGCGGATTTGGCAAGTGCGTGGCGCCCAACCAGTGCGAGTG
CTTCGCCGGGTTCATTAAACGGCCCAATTGGAATGTATGCGAAGCTGAGT
GCTACCTGAACTGCGAGAATGGGCTCTGTGAGTCGCGGTACAAGTGTCAC
TGCCGCGAAGGATATCGCTACGACGTGAACACCACCAGCTGTTTGCCGGA
GTGCAGCGACAACTGTGGCCAAGGAAATGGGGTGTGCATTGCGCCCGGGA
GTGTGCCGCTGCTTCCGAGGATACGAGGTCCACGGTGCCGAGTGTCGGCC
AAAGTGTGAGAGATTCTGCGGCAAATACGGCGTTGTGTGCTCCGAATCTG
CGCCTGGTGGTGAGGTCAACAGCATTGCCGAACGAAGCTGTGACGAAATC
GAGACTGCAGTTGCCCATCGGGGAAACCCACTCTCTCGATTCCTGTTTGA
AAGGCGACGGCTCTGTCACAATCTCAACCTAGCGAAAGGA
UFO01820.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NimB1-RA | 1286 | CG33119-RA | 42..1179 | 9..1137 | 5165 | 97.8 | Plus |
| NimB1-RB | 1289 | CG33119-RB | 42..1182 | 9..1137 | 5125 | 97.6 | Plus |
| NimB4-RA | 1478 | CG33115-RA | 796..878 | 631..713 | 205 | 83.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13963899..13964457 | 200..758 | 2795 | 100 | Plus |
| 2L | 23513712 | 2L | 13964535..13964738 | 758..962 | 975 | 99.5 | Plus |
| 2L | 23513712 | 2L | 13963548..13963738 | 9..199 | 955 | 100 | Plus |
| 2L | 23513712 | 2L | 13968941..13969023 | 713..631 | 205 | 83.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:59:35 has no hits.
UFO01820.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:05:24 Download gff for
UFO01820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nimB1-RA | 3..1106 | 9..1106 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:17 Download gff for
UFO01820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NimB1-RA | 33..1145 | 1..1106 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:44:11 Download gff for
UFO01820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NimB1-RA | 33..1145 | 1..1106 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:44:11 Download gff for
UFO01820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13963539..13963738 | 1..199 | 98 | -> | Plus |
| 2L | 13963899..13964456 | 200..757 | 100 | -> | Plus |
| 2L | 13964535..13964738 | 758..962 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:17 Download gff for
UFO01820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13963539..13963738 | 1..199 | 98 | -> | Plus |
| arm_2L | 13963899..13964456 | 200..757 | 100 | -> | Plus |
| arm_2L | 13964535..13964738 | 758..962 | 99 | -> | Plus |
