UFO01822.5prime Sequence
1121 bp (1006 high quality bases) assembled on 2008-10-31
> UFO01822.5prime
CAGTCGACATGGATACCAACAAAAGAATCCTCTGCCGCGTGGGCTTGGAT
GTTTTAATCTTGCTCTGCGCTGGATTTCCCATACTGCTGTTTTTCCTGCT
GGGCGAGCCGTACAAGCGGGGCTTCTTCTGCGATGACGAGTCACTGAAGC
ACCCGTTCCACGATTCTACGGTCCGGAATTGGATGCTATACTTCATCGGA
GCTGTGATACCAGTCGGCGTGATATTCATCGTGGAGGTCATCATTTCACA
GAACAAGGCCAAGCAGGATAATGGCAATGCAACCAGTCGAAGGTACGTCT
TTATGAACTACGAACTGCCCGACTGGATGATCGAGTGCTACAAGAAGATC
GGCATCTATGCCTTCGGCGCTGTGCTCAGCCAGCTGACCACGGATATAGC
CAAGTACTCCATCGGCCGACTGCGTCCCCATTTCATCGCGGTGTGCCAGC
CTCAAATGGCCGACGGCAGCACCTGCGACGATGCGATCAATGCGGGAAAA
TACATCCAGGAGTTCACATGCAAGGGAGTTGGATCGTCGGCGCGCATGCT
CAAAGAGATGCGCCTCTCCTTCCCCAGTGGCCACTCCAGCTTCACCTTCT
TCGCCATGGTCTATCTGGCGCTCTACCTGCAGGCTCGCATGACCTGGCGG
GGCTCCAAGCTGCTGCGTCACCTTCTCCAGTTCCTGTTCATCATGGTGGC
CTGGTACACAGCCCTAAGTCGCGTATCGGACTACAAGCACCACTGGTCCG
ATGTGCTGGCAGGATCGCTTATTGGCTCCATAAGCGCACTGGTCGTGGCC
AACTATGTCTCCGACTTGTTTCAAAAGCCCACACGAAGCCCTATTTGGCG
CGTACAGTGCAAGACATGAATGCATCGCCGGCCCAGGCATTACGATTACT
ACAAACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAGT
GGTCATAATCATATCATATCATATCATATCACACTAGCTAGAGATCCTGT
CATGACTAGTGCTTGGATCTCACATAAAAACGCCCGGGCGCCACCGAGCG
TTCTGAACAATTCGAATGGGAGTTCTGAAGTCATTACTGATCATCAACAG
AGTTCAGCAACTCGAAATCAA
UFO01822.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wun-RA | 1626 | CG8804-RA | 219..1119 | 8..906 | 4440 | 99.7 | Plus |
| wun-RB | 2026 | CG8804-RB | 619..1519 | 8..906 | 4440 | 99.7 | Plus |
| wun-RC | 1563 | CG8804-RC | 619..1408 | 8..797 | 3950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9403705..9403926 | 442..221 | 1110 | 100 | Minus |
| 2R | 25286936 | 2R | 9402656..9402836 | 620..440 | 905 | 100 | Minus |
| 2R | 25286936 | 2R | 9402408..9402586 | 798..620 | 895 | 100 | Minus |
| 2R | 25286936 | 2R | 9404307..9404459 | 221..69 | 765 | 100 | Minus |
| 2R | 25286936 | 2R | 9401038..9401149 | 906..797 | 445 | 97.3 | Minus |
| 2R | 25286936 | 2R | 9409213..9409274 | 69..8 | 310 | 100 | Minus |
| 3L | 28110227 | 3L | 22472833..22473048 | 561..776 | 210 | 73.1 | Plus |
| 2R | 25286936 | 2R | 9417435..9417540 | 661..766 | 200 | 79.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:20:06 has no hits.
UFO01822.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:05:29 Download gff for
UFO01822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wun-RA | 197..1106 | 1..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:37 Download gff for
UFO01822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wun-RB | 613..1522 | 1..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:31 Download gff for
UFO01822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wun-RB | 613..1522 | 1..910 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:31 Download gff for
UFO01822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9402409..9402585 | 621..797 | 100 | <- | Minus |
| 2R | 9402656..9402835 | 441..620 | 100 | <- | Minus |
| 2R | 9403707..9403925 | 222..440 | 100 | <- | Minus |
| 2R | 9404307..9404458 | 70..221 | 100 | <- | Minus |
| 2R | 9409213..9409280 | 1..69 | 95 | | Minus |
| 2R | 9401035..9401148 | 798..910 | 95 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:37 Download gff for
UFO01822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5291812..5291963 | 70..221 | 100 | <- | Minus |
| arm_2R | 5296718..5296785 | 1..69 | 95 | | Minus |
| arm_2R | 5288540..5288653 | 798..910 | 95 | <- | Minus |
| arm_2R | 5289914..5290090 | 621..797 | 100 | <- | Minus |
| arm_2R | 5290161..5290340 | 441..620 | 100 | <- | Minus |
| arm_2R | 5291212..5291430 | 222..440 | 100 | <- | Minus |
