UFO01823.5prime Sequence
1114 bp (981 high quality bases) assembled on 2008-10-31
> UFO01823.5prime
CAGTCGACATGAGCGCCTTTCCCGGTACGTTCGCGTTCGACGAATATGGT
CGGCCTTTCATCATCCTGCGCGACCAGGAGCGCCAGAAGCGCATCACAGG
AACAGATGCCATAAAGACGCACATTATGGCCGCCCGCCAGATCGCGTCCA
CCCTGAAGACCTCTCTGGGTCCCAAGGGTCTGGACAAGATCATGGTCAGT
CCCGACGGCGACGTGACTGTGACCAACGATGGCGCCACCATCATGAAGCT
GATGGAGGTTGACCACGAGATTGCCAAGCTGATGGTGCAGCTGTCGCAGT
CACAGGACGACGAGATCGGCGATGGAACCACCGGCGTTGTCGTGCTGGCC
GGAGCACTCTTGGAGCAGGCCGAGGGACTGATCGACAGGGGCATTCATCC
CATTCGCATCGCCGATGGCTTTGAATTGGCCGCCCAGTGCGCCATCAAGC
AGCTGGACGCGATCGCCCAACCCTTCCCCGTGGACCCGAAGAACAAGGAG
CCACTTATCCAGATCGCCATGACCACGCTGGGCAGCAAGATCGTGAACAA
GTGCCATCGTCAGATGGCCGAAATGGCTGTGGATGCTGTGCTGAATGTGG
CCGACATTGAGAAGAAGGACGTGAACTTCGAGCTCATCAAGATCGAGACC
AAAGTGGGCGGTCGCATGGAGGACTCGATGCTGGTGAAGGGTGTCATCGT
TGACAAGACCCTCAGCCATTCGCAGATGCCCAAGGAGCTAAGGAACGTCA
AGCTGGCCATTCTCACCTGCCCGTTTGAGCCCCCGAAGCCAAAGACCAAG
CATAAGCTCGATGTTACCTCCGCGGAAGACTACAGGGCGCTGCGCGAGTA
CGAGCAAGAGAGTTCACCCAGATGGTCAAGCAGGTGAAGGACGCCGGCGC
CACTCTTGCCATCTGCCAGTGGGGCTTCGATGATGAGCCAACCAACTGTT
GCTTCAGCAGGAGCTGCCCGCCGTGCCGCTGGTGGCGTCCGGAAATCGAG
CTGATTGCCATCGCCCACCGGTGGACGCATCTGCCGCGTTTCGAAGAAGC
CTCACGCCTGAAAAACTAGGTGTTGCGGGAACTCCGTTTCGGCAATGCCA
TCCGAACTCAAGAA
UFO01823.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cct5-RA | 1948 | CG8439-RA | 119..1193 | 8..1080 | 5065 | 98.5 | Plus |
| Cct5-RB | 1754 | CG8439-RB | 33..999 | 116..1080 | 4525 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12175735..12176702 | 115..1080 | 4330 | 97.8 | Plus |
| 2R | 25286936 | 2R | 12174920..12175028 | 8..116 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:16:07 has no hits.
UFO01823.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:05:27 Download gff for
UFO01823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cct5-RA | 145..1234 | 8..1097 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:13 Download gff for
UFO01823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cct5-RA | 119..1208 | 8..1097 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:45 Download gff for
UFO01823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cct5-RA | 119..1208 | 8..1097 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:45 Download gff for
UFO01823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12174920..12175028 | 8..116 | 100 | -> | Plus |
| 2R | 12175737..12176717 | 117..1097 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:13 Download gff for
UFO01823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8062425..8062533 | 8..116 | 100 | -> | Plus |
| arm_2R | 8063242..8064222 | 117..1097 | 97 | | Plus |
