UFO01827.5prime Sequence
1121 bp (1011 high quality bases) assembled on 2008-10-31
> UFO01827.5prime
CAGTCGACATGTCCGCTTCACCCACCGCCCGTCAAGCCATCACCCAGGCC
CTGCCCATGATCACCAGGAAGGTTGTCATCTCGGATCCGATCCAGATGCC
CGAGGTGTACTCCTCGACGCCCGGCGGAACCCTCTACTCCACCACTCCTG
GAGGCACCAAACTTATCTACGAGCGGGCTTTCATGAAGAATCTCCGTGGC
TCCCCATTGAGCCAAACTCCGCCGTCCAACGTGCCCAGTTGCTTGCTGAG
GGGAACTCCGCGTACTCCCTTCCGCAAGTGCGTGCCCGTCCCCACGGAAC
TGATCAAGCAGACCAAGTCGCTGAAGATTGAGGACCAGGAACAGTTCCAA
CTGGATCTGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGT
AAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTA
GGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCC
CGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCAT
TACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCC
CCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCC
GACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCA
TCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGG
GCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACT
CACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAG
GGAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGT
GTAGAAACTGCCGGAATCGTCGTGTATTCACTCAGAGCGATGAAAACGTT
TCAGTTTGCTCATGGAAACGGTGTACAGGTGACACTATCCCATATCACAG
CTCACGTCTTTCATGCATACGAATTCGATGACATCATCAGGGGCAGATGT
GATAAGCGATAAACTGGGGCTATTTTTCTTTACGCTTAAAAGCGTAAATC
ACGGACGCTGTTTAGGACTTG
UFO01827.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:19:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Thor-RB | 667 | CG8846-RB | 95..445 | 9..359 | 1755 | 100 | Plus |
| Thor-RA | 755 | CG8846-RA | 183..533 | 9..359 | 1755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:19:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3479183..3479390 | 152..359 | 1040 | 100 | Plus |
| 2L | 23513712 | 2L | 3478616..3478761 | 9..154 | 730 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:19:35 has no hits.
UFO01827.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:05:18 Download gff for
UFO01827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Thor-RA | 175..533 | 1..359 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:26 Download gff for
UFO01827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Thor-RA | 175..533 | 1..359 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:17 Download gff for
UFO01827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Thor-RA | 175..533 | 1..359 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:17 Download gff for
UFO01827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3478608..3478760 | 1..153 | 97 | -> | Plus |
| 2L | 3479185..3479390 | 154..359 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:26 Download gff for
UFO01827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3478608..3478760 | 1..153 | 97 | -> | Plus |
| arm_2L | 3479185..3479390 | 154..359 | 100 | == | Plus |
