UFO01829.5prime Sequence
1137 bp (990 high quality bases) assembled on 2008-10-31
> UFO01829.5prime
CAGTCGACATGGGCGACGGTGCTGGAAATTGGTGTCTCATTGAATCCGAT
CCCGGGGTATTCACAGAGCTTATTCGCGAATTCGGATGCGATGGGGCACA
GGTGGAGGAGATCTGGAGTCTCGACAGCGAGTCCTTCAAGAACCTAGAGC
CCATCCATGGTCTGATCTTCCTGTTCAAGTGGGTGCAGGAGGATGAACCC
GCTGGAAAAGTGGTCCTGGATCGGGAGAACATCTTCTTTGCCAAGCAGGT
GATCAACAACGCATGCGCCACCCAGGCGATCTTGAGCCTCCTGATGAACC
TGGATCATGAGGACATCAAATTGGGCGAGACCCTCACCAATTTTAAGGAG
TTCTGCCAGTGCTTCGATCCGTACAACAAGGGATTAACTTTGAGCAACGC
TAGCCAGATTCGCACGGTGCACAACTCCTTTGCTCGCCCAACACTCTTCG
AGCTGGACACTAAGAACCAGAAGAAGGACGATGACGTGTACCACTTTGTC
GGCTATATGCCCATCGGAGGAAGACTGTACGAGCTGGACGGCCTGAGGGA
GGGACCCATTGATCTTGGTGAGATCAAGTCGGAGCAGAACTGGATCGATG
TGGTGCGTCCGATTATTGAGAAGCGCATGCAGCGCTACAGCGACGGCGAG
ATCCACTTCAATCTGATGGCTCTGATCTCGGACAGGCAGCGCATTTATGA
ACAGCAGATTGAGAAGCTGCTTAATCCGGCGCCCAATGCTATGGACACTG
AGGAGGATCGACAGGCGGAGATCAGTAGCTTGCGCACGTACATAGAGTAC
GAGATTCAGAAAAAGAAGCGCTACAAAGTGGAGAATGTGCGGCGCAAGCA
CAACTATTTGCCCTTCATCGTGAGCTCTTAAAATTCTGGGCGAGACGGAC
ACTAATGCTCATCTACGAGAGCCAAGCAGAGGGCGCTAGAACGCGAGCAG
CGCAGCGCAAAAGGATACCGACGCAAGCTTTCTAGACATTCGTTGGCGCG
CGGGCCCAGGTAGTGTCATAATCATAATCATAATCATATCATAATCACAC
TAGCCTAAGAGATCCTGGTCATGACTATGGCTGGATCTCACCAATAAAAA
CCGCCCGGCGCAACGAACGTTCGAACAATCGAAATGA
UFO01829.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Uch-L5-RB | 1153 | CG3431-RB | 117..1090 | 7..972 | 4665 | 99.1 | Plus |
| Uch-L5-RA | 1394 | CG3431-RA | 117..1090 | 7..972 | 4665 | 99.1 | Plus |
| Uch-L5R-RA | 1298 | CG1950-RA | 642..835 | 489..682 | 295 | 76.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9475797..9476693 | 972..84 | 4105 | 99 | Minus |
| 3L | 28110227 | 3L | 9476771..9476849 | 85..7 | 395 | 100 | Minus |
| X | 23542271 | X | 12055801..12055994 | 682..489 | 295 | 76.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:01:01 has no hits.
UFO01829.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:05:16 Download gff for
UFO01829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uch-L3-RA | 119..1108 | 1..984 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:51 Download gff for
UFO01829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uch-L5-RA | 111..1100 | 1..984 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:16 Download gff for
UFO01829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uch-L5-RA | 111..1100 | 1..984 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:16 Download gff for
UFO01829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9475787..9476692 | 85..984 | 98 | <- | Minus |
| 3L | 9476772..9476853 | 1..84 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:51 Download gff for
UFO01829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9468887..9469792 | 85..984 | 98 | <- | Minus |
| arm_3L | 9469872..9469953 | 1..84 | 95 | | Minus |
