UFO01830.5prime Sequence
1148 bp (1048 high quality bases) assembled on 2008-10-31
> UFO01830.5prime
CAGTCGACATGCCCCACCAAGAGAGAAAATCGATGTGGTTCTTTGGCGGA
TTGGCGAGCGTAGGTGCGGCCATGGTGACCCATCCGCTCGACCTCATCAA
GGTCACGCTGCAGACGCAACAGGGTCACCTGTCGGTGGCCCAGTTGATCC
CTAAACTCGCCCGCGAACAGGGAGTACTCGTCTTCTACAACGGCCTCTCC
GCCTCAGTGTTGCGCCAATTGACATACTCCACTGCGAGATTCGGGGTGTA
TGAGGCCGGAAAGAAGTACGTCAATACGGACAGCTTTGGCGGCAAGGTGG
CCCTGGCAGGTGCATCCGGTCTCGTCGGAGGAATCGTTGGAACTCCGGCT
GACATGGTCAATGTGCGCATGCAGAACGACGTAAAACTACCGCCGCAACA
ACGACGCAACTACAATAATGCCTTCGATGGACTGGTTAGGGTCTACCGCC
AGGAGGGATTCAAGCGACTCTTTTCTGGAGCCACCGCAGCGACTGCCCGT
GGAATCCTGATGACGATTGGCCAAATTGCATTTTACGACCAGACGAAGAT
CTACCTGCTGGCCACGCCTTATTTCCAAGACAACCTGGTTACGCACTTCA
CCGCCTCCCTGGTGGCCGGAACGATAGCCACCACTCTCACCCAACCGTTG
GATGTGCTGAAGACGCGGTCCATGAACGCGAAACCCGGCGAGTTCAATGG
CCTGTGGGACATCGTGAAGCACACGGCGAAACTGGGTCCCCTCGGCTTCT
TTAAGGGCTATGTGCCGGCATTTGTGCGTCTGGGTCCACACACGATCATC
ACCTTTGTGTTCCTGGAGCAATTGCGTCTCAAGTTTGGCACCTTGAATGC
AAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATA
ATCATAATCATAATCATAATCATAATCACAACTAGCCTAGAGATCCTGGT
CATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCG
AGCGTTCTGAACAAATTCAGAATGGGAGTTCTGAGGTCATACTGGATCTT
TTCAACAGGGAGTCCAGCGAGCCTCGATATCAAATACGCCCGGCCTGGCA
ACTTCATGCGAGTACTTGTTGTATTCTATAAGAGCATTCTGCGACACT
UFO01830.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dic1-RC | 1587 | CG8790-RC | 160..999 | 9..848 | 4200 | 100 | Plus |
| Dic1-RA | 1400 | CG8790-RA | 160..999 | 9..848 | 4200 | 100 | Plus |
| Dic1-RB | 1555 | CG8790-RB | 315..1154 | 9..848 | 4200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13368252..13368690 | 410..848 | 2195 | 100 | Plus |
| 3R | 32079331 | 3R | 13367761..13368161 | 9..409 | 2005 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:27:56 has no hits.
UFO01830.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:05:14 Download gff for
UFO01830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8790-RA | 146..997 | 1..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:01 Download gff for
UFO01830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dic1-RB | 307..1158 | 1..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:18 Download gff for
UFO01830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dic1-RB | 307..1158 | 1..854 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:18 Download gff for
UFO01830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13367753..13368161 | 1..409 | 99 | -> | Plus |
| 3R | 13368252..13368694 | 410..854 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:01 Download gff for
UFO01830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9193475..9193883 | 1..409 | 99 | -> | Plus |
| arm_3R | 9193974..9194416 | 410..854 | 99 | == | Plus |
