UFO01836.5prime Sequence
1127 bp (1020 high quality bases) assembled on 2008-10-31
> UFO01836.5prime
CAGTCGACATGCATTCGCCGGCTGCCAAAGTGTCGGGCTACGTCGTCCTG
ATGATTGTGCAAATAATCTTCCTGGTTCTATTCTGGCTGTTCGTGCGTTA
CGAAAAGACGGCGCTGCCCCTGGCAATCGACGCCGAAGACGCTGGATCAG
CAAACGAACACGTTTCCAAATATCCGCAGTTCCAGGACATCCAGGTGATG
ATCTTCATTGGCTTTGGCTTCCTAATGACCTTCCTGCGGAAGTACGGATA
CAGTGCCACCGGATTCACCCTGTTCATGGCTGCTCTAGTAGTGCAATGGG
CTGTGCTCATGAAGGGATTCCTCCACATGGAGGGCGGCAAGATCAGCCTC
TCCCTGGAGAACATCATTGATGCGGATATAGCCGCCGCGGTGCCCCTGAT
AAGCATGGGCGCTCTGCTCGGCAGAACCACGCCCATCCAACTCCTGTGCA
TGTCCGTTTTTGAGGTGGCTCTTTTCGCGGCCAATGAGTATCTGGCTCTT
CATGTGTTCAGTATCTGCGACTGCGGCGGCTCTATCACTGTCCATGCTTT
TGGAGCCTACTTTGGACTGGCTGTTGCCCTGATGCTGAGACCCGCCAGCG
ACCAGAACGAAACGGGAAAGCTAGAGGGCGCCAGCTATACGTCGGACATC
TTCGCCATGATCGGCACCACCTTCCTGTGGGTGTACTGGCCCAGCTTTAA
CTCCGTTCTGGCCGACGGAGCCGGCGGCGAGCGGGCCATTTTGAACACGT
TCCTGTCATTAGCCGCGGCAACAGTGACCACCTTCGTTGTATCCGCGCTT
GTCAGCCACGAGAATAAATTGGACATGGTGCACGTGCAGAACTCGACCCT
CGCCGGCGGAGTTGCCGTGGGCACGGTGTGCAACTTGCTGCTCGGCGCCC
ACGGAGCTGTCTTAATTGGCATTATCGCCGGCACGGTCTCGGTGCTCGGC
TATCGCTATTTAACACCCTGATGACGGCCAATCTGAGCTGCACGACACTG
TGGCGTGCAACAACCTGCACGATGCTGCCCTGATTTCGCCATTGCCTCCG
CCAATTACGCTCGATGCCACCGTGGGCGAATTACAATCGACTGCAGAATT
TCCGGCATGGTGTCACGACCGAAACCA
UFO01836.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rh50-RC | 1974 | CG7499-RC | 326..1405 | 8..1079 | 5150 | 99 | Plus |
Rh50-RB | 2773 | CG7499-RB | 326..1405 | 8..1079 | 5150 | 99 | Plus |
Rh50-RA | 1836 | CG7499-RA | 326..1405 | 8..1079 | 5150 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4913695..4913956 | 513..774 | 1310 | 100 | Plus |
3L | 28110227 | 3L | 4917454..4917647 | 772..965 | 970 | 100 | Plus |
3L | 28110227 | 3L | 4910693..4910862 | 8..177 | 850 | 100 | Plus |
3L | 28110227 | 3L | 4912672..4912840 | 178..346 | 845 | 100 | Plus |
3L | 28110227 | 3L | 4913451..4913619 | 344..512 | 845 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:34:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pogo | 2121 | pogo DMPOGOR11 2121bp AKA(S90749) Derived from X59837 (g8354) (Rel. 45, Last updated, Version 10). | 264..320 | 444..500 | 114 | 66.7 | Plus |
UFO01836.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:05:22 Download gff for
UFO01836.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh50-RA | 305..1406 | 1..1096 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:36 Download gff for
UFO01836.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh50-RA | 323..1424 | 1..1096 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:12 Download gff for
UFO01836.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh50-RA | 323..1424 | 1..1096 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:12 Download gff for
UFO01836.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4910690..4910862 | 1..177 | 97 | -> | Plus |
3L | 4912672..4912840 | 178..346 | 100 | -> | Plus |
3L | 4913454..4913619 | 347..512 | 100 | -> | Plus |
3L | 4913695..4913956 | 513..774 | 100 | -> | Plus |
3L | 4917457..4917647 | 775..965 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:36 Download gff for
UFO01836.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4910690..4910862 | 1..177 | 97 | -> | Plus |
arm_3L | 4912672..4912840 | 178..346 | 100 | -> | Plus |
arm_3L | 4913454..4913619 | 347..512 | 100 | -> | Plus |
arm_3L | 4913695..4913956 | 513..774 | 100 | -> | Plus |
arm_3L | 4917457..4917647 | 775..965 | 100 | -> | Plus |