Clone UFO01836 Report

Search the DGRC for UFO01836

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:18
Well:36
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptRh50-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO01836.5prime Sequence

1127 bp (1020 high quality bases) assembled on 2008-10-31

> UFO01836.5prime
CAGTCGACATGCATTCGCCGGCTGCCAAAGTGTCGGGCTACGTCGTCCTG
ATGATTGTGCAAATAATCTTCCTGGTTCTATTCTGGCTGTTCGTGCGTTA
CGAAAAGACGGCGCTGCCCCTGGCAATCGACGCCGAAGACGCTGGATCAG
CAAACGAACACGTTTCCAAATATCCGCAGTTCCAGGACATCCAGGTGATG
ATCTTCATTGGCTTTGGCTTCCTAATGACCTTCCTGCGGAAGTACGGATA
CAGTGCCACCGGATTCACCCTGTTCATGGCTGCTCTAGTAGTGCAATGGG
CTGTGCTCATGAAGGGATTCCTCCACATGGAGGGCGGCAAGATCAGCCTC
TCCCTGGAGAACATCATTGATGCGGATATAGCCGCCGCGGTGCCCCTGAT
AAGCATGGGCGCTCTGCTCGGCAGAACCACGCCCATCCAACTCCTGTGCA
TGTCCGTTTTTGAGGTGGCTCTTTTCGCGGCCAATGAGTATCTGGCTCTT
CATGTGTTCAGTATCTGCGACTGCGGCGGCTCTATCACTGTCCATGCTTT
TGGAGCCTACTTTGGACTGGCTGTTGCCCTGATGCTGAGACCCGCCAGCG
ACCAGAACGAAACGGGAAAGCTAGAGGGCGCCAGCTATACGTCGGACATC
TTCGCCATGATCGGCACCACCTTCCTGTGGGTGTACTGGCCCAGCTTTAA
CTCCGTTCTGGCCGACGGAGCCGGCGGCGAGCGGGCCATTTTGAACACGT
TCCTGTCATTAGCCGCGGCAACAGTGACCACCTTCGTTGTATCCGCGCTT
GTCAGCCACGAGAATAAATTGGACATGGTGCACGTGCAGAACTCGACCCT
CGCCGGCGGAGTTGCCGTGGGCACGGTGTGCAACTTGCTGCTCGGCGCCC
ACGGAGCTGTCTTAATTGGCATTATCGCCGGCACGGTCTCGGTGCTCGGC
TATCGCTATTTAACACCCTGATGACGGCCAATCTGAGCTGCACGACACTG
TGGCGTGCAACAACCTGCACGATGCTGCCCTGATTTCGCCATTGCCTCCG
CCAATTACGCTCGATGCCACCGTGGGCGAATTACAATCGACTGCAGAATT
TCCGGCATGGTGTCACGACCGAAACCA

UFO01836.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:53
Subject Length Description Subject Range Query Range Score Percent Strand
Rh50-RC 1974 CG7499-RC 326..1405 8..1079 5150 99 Plus
Rh50-RB 2773 CG7499-RB 326..1405 8..1079 5150 99 Plus
Rh50-RA 1836 CG7499-RA 326..1405 8..1079 5150 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4913695..4913956 513..774 1310 100 Plus
3L 28110227 3L 4917454..4917647 772..965 970 100 Plus
3L 28110227 3L 4910693..4910862 8..177 850 100 Plus
3L 28110227 3L 4912672..4912840 178..346 845 100 Plus
3L 28110227 3L 4913451..4913619 344..512 845 100 Plus
Blast to na_te.dros performed 2014-11-28 20:34:52
Subject Length Description Subject Range Query Range Score Percent Strand
pogo 2121 pogo DMPOGOR11 2121bp AKA(S90749) Derived from X59837 (g8354) (Rel. 45, Last updated, Version 10). 264..320 444..500 114 66.7 Plus

UFO01836.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:05:22 Download gff for UFO01836.5prime
Subject Subject Range Query Range Percent Splice Strand
Rh50-RA 305..1406 1..1096 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:36 Download gff for UFO01836.5prime
Subject Subject Range Query Range Percent Splice Strand
Rh50-RA 323..1424 1..1096 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:12 Download gff for UFO01836.5prime
Subject Subject Range Query Range Percent Splice Strand
Rh50-RA 323..1424 1..1096 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:12 Download gff for UFO01836.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4910690..4910862 1..177 97 -> Plus
3L 4912672..4912840 178..346 100 -> Plus
3L 4913454..4913619 347..512 100 -> Plus
3L 4913695..4913956 513..774 100 -> Plus
3L 4917457..4917647 775..965 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:36 Download gff for UFO01836.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4910690..4910862 1..177 97 -> Plus
arm_3L 4912672..4912840 178..346 100 -> Plus
arm_3L 4913454..4913619 347..512 100 -> Plus
arm_3L 4913695..4913956 513..774 100 -> Plus
arm_3L 4917457..4917647 775..965 100 -> Plus