UFO01838.5prime Sequence
1140 bp (1047 high quality bases) assembled on 2008-10-31
> UFO01838.5prime
CAGTCGACATGACGCACTGGGAGGACTTCTACAACACGCACCTGCCGCCC
GCGGACTTCGAGGACAATCGCTCCCTGCTCAAGGAGTTCTGCGAACGGCA
CAACAAGCTCCAGAATCGCATCGTCCTCGTCACGTCCGGTGGCACCACAG
TTCCCCTGGAGCACAATACGGTGCGGTTTGTGGACAATTTTAGTGCTGGA
ACGCGTGGCTCCGCCTCGGCGGAATACTTCCTCGACCACGACTATGCCGT
GATTTTCATGCATCGCCACAAGTCGCTGGAGCCCTTCACGCGCCACTTCA
CCGGCCAGCAGTTCTTCGACATGCTGGACATTGCGGACAACAGCCAGAGT
TCGACGATAGCCATCAAACCGGATTCGGTGGACGTGTTTGCTCCGGTGCT
GGCCAAATACAAGATAGCCCGCGAAACGCAGATGATCCTGTACGTGAACT
TCACCAGCGTGGTGGACTACATGTGGCTGCTCCGCGCCGCCTGCGAGTGC
CTGGCCGCCTTCGAGGAGCGAGCCGTGCTCTACCTAGCCGCAGCCGTATC
CGATTTCTACATACCCGAGGACATGATGCCCACCCACAAAATGCAATCAG
GAGATGGAGCGCCGACGATTTCGCTGCAGCTGGTGCCAAAAATGCTGGCC
CCCCTCGCCAGTTTGTGGGTCCCGCACGCCTTTGTGGTGTCCTTTAAACT
GGAAACGGACGAGAGCCTATTGATTGTGAAGGCACGTGACAGTCTCAACA
AATACAAGCACAAGCTGGTCATTGCCAATGTGCTGCAGACACGCAAGCAT
CGCGTGGTGTTCGTCACGCCCACAGATTCCTACGAGCTGCATTTGACTCG
CGAACAGACGCTGCAAGGACTCGAGATCGAGGAGCCCATCGTGCCGATGT
GGTGCAAAAGCACGGCGAGTTCATCAGTAACGCTCAACAGCGCCAAGCAG
CTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAGTGGTCATATCAT
ATCATATCATAATCATATCACAACTAGCCTAGGAGATCTGTCATGACTGT
GCTGATCTCACCAATAAAAAACGCCCGGCGCACGAGCGTTCTGAACAAAT
CGAGTGATCTGAGGTCATACTGATCTTACACGGATCAGCG
UFO01838.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ppcs-RD | 2192 | CG5629-RD | 649..1589 | 7..946 | 4680 | 99.9 | Plus |
| Ppcs-RC | 4134 | CG5629-RC | 649..1589 | 7..946 | 4680 | 99.9 | Plus |
| Ppcs-RA | 4134 | CG5629-RA | 649..1589 | 7..946 | 4680 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19145481..19145925 | 578..134 | 2225 | 100 | Minus |
| 3R | 32079331 | 3R | 19142088..19142274 | 764..578 | 935 | 100 | Minus |
| 3R | 32079331 | 3R | 19141879..19142020 | 903..763 | 660 | 99.3 | Minus |
| 3R | 32079331 | 3R | 19147135..19147262 | 134..7 | 640 | 100 | Minus |
| 3R | 32079331 | 3R | 19141599..19141644 | 946..901 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:30:15 has no hits.
UFO01838.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:05:09 Download gff for
UFO01838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5629-RB | 640..1594 | 1..954 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:59 Download gff for
UFO01838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppcs-RA | 643..1597 | 1..954 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:46 Download gff for
UFO01838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppcs-RA | 643..1597 | 1..954 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:46 Download gff for
UFO01838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19141599..19141643 | 902..946 | 100 | <- | Minus |
| 3R | 19141881..19142018 | 765..901 | 99 | <- | Minus |
| 3R | 19142088..19142273 | 579..764 | 100 | <- | Minus |
| 3R | 19145481..19145924 | 135..578 | 100 | <- | Minus |
| 3R | 19147135..19147267 | 1..134 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:59 Download gff for
UFO01838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14967321..14967365 | 902..946 | 100 | <- | Minus |
| arm_3R | 14967603..14967740 | 765..901 | 99 | <- | Minus |
| arm_3R | 14967810..14967995 | 579..764 | 100 | <- | Minus |
| arm_3R | 14971203..14971646 | 135..578 | 100 | <- | Minus |
| arm_3R | 14972857..14972989 | 1..134 | 97 | | Minus |
