UFO01842.5prime Sequence
1137 bp (1031 high quality bases) assembled on 2008-10-31
> UFO01842.5prime
CAGTCGACATGGCCGACCTACGGAGTCGCCACAATGGAACCGCTGCCATG
GAGAAGCAAAGCCACAGCCAAACCGGAAGCCACCATCACAACAACAATAA
AGCGCTGGATAAGGAAGCATCGGAGAATGGAAAGCCGGAGAAGAGTGATC
CCATGATATACATAATCTTCGTATCGCTGCTCTTCGACTTACTGGCCTTC
ACCATCATTCTGCCGCTGCTGCCCTCGCTGTTGGAGCACTATCGCCAGAA
CGACAGCTCCGGCTTGTATGCCGTGCTCACGGATCGGGTGCGCTGGTTCC
AGCAGCTCCTGGGCGCCCCGGATCGCTACATATCGGTGCTATTCGGAGGC
TTTCTCGGCTCCATGTTCAGCTTCCTGCAGTTCGTGGCCAGTCCGATTGT
CGGAGGACTCTCGGACTACTACGGACGGAAACCAGTCCTGCTGGCTTGTG
CGAGTGGTATTGCGTTATCCTATCTGATCTGGGCCTGCTCCAGCAACTTT
GCCCTGTTCGTTTTGGCCCGCTTCGTGGGCGGAATTAGCAAGGGCAACAT
ATCCCTGTGCATGTCCGTCATTACGGATGTGTCCAGCGTTAAGACCCGTG
GACGCGGTATGGCCCTTGTGGGTGTGGCCTTCTCGCTGGGCTTTATTGTG
GGGCCCATGATTGGAGCCCTGTTCGCCATATTCTCCGATAAAAGTGGAAG
TACTTGGTTTGTGTTGCCCTCTCTGCTGGCGTTTGGCCTGACAGTTGGAG
ATCTTGTGGTCCTGGCCTGCTGTCTGCGGGAAACGTTGCCCAAGGAGAAA
CGTGTTAAGGAGATATCATCTGCACTGTCTTATGGCCTGCAGTTGCTCAA
TTTTTCGGCCATATTTAGATTTGCTGCCATCAAAAATGTGCCTAAGAAAG
ACATTGCGGCACTGCGATCCATTGGCCTGTATACTTCTTGTATCTCTTTC
TGTATTCCGGCTTGAGTTCACCGTCACATTTCTGATGTACCACAAATTCG
TACACTTCGATGGATCAGGCGAAAATGTTTTGAAACGGGTGTAATCATGA
CTTGGTGGCAGGGAATCGGTGGTTCGACGCTGCCGAGGCGAAGAATCAAG
GCAATGCCATTCTTCAGTTGTTAACTGAATTGTCCGC
UFO01842.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rtet-RA | 1722 | CG5760-RA | 162..1278 | 9..1119 | 5205 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21108607..21109050 | 9..452 | 2220 | 100 | Plus |
| 3R | 32079331 | 3R | 21109246..21109589 | 452..795 | 1705 | 99.7 | Plus |
| 3R | 32079331 | 3R | 21110017..21110185 | 867..1031 | 665 | 97 | Plus |
| 3R | 32079331 | 3R | 21109650..21109725 | 793..868 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:51:11 has no hits.
UFO01842.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:05:04 Download gff for
UFO01842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rtet-RA | 152..1285 | 1..1128 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:41 Download gff for
UFO01842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rtet-RA | 154..1287 | 1..1128 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:31:34 Download gff for
UFO01842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rtet-RA | 154..1287 | 1..1128 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:31:34 Download gff for
UFO01842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21108599..21109050 | 1..452 | 99 | -> | Plus |
| 3R | 21109247..21109588 | 453..794 | 99 | -> | Plus |
| 3R | 21109652..21109725 | 795..868 | 100 | -> | Plus |
| 3R | 21110019..21110194 | 869..1038 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:41 Download gff for
UFO01842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16934321..16934772 | 1..452 | 99 | -> | Plus |
| arm_3R | 16934969..16935310 | 453..794 | 99 | -> | Plus |
| arm_3R | 16935374..16935447 | 795..868 | 100 | -> | Plus |
| arm_3R | 16935741..16935916 | 869..1038 | 96 | -> | Plus |
