UFO01844.5prime Sequence
1136 bp (1029 high quality bases) assembled on 2008-10-31
> UFO01844.5prime
CAGTCGACATGGAGGTCAAAGAAGTGGTAGTGATTGTAAAATGGAGTGGT
AAGGAGTACCCGGTGGACCTCACCGACCAGGACACCGTGGAAGTGCTGCG
TCACGAGATATTCCGCAAGACACAGGTGCGTCCGGAACGTCAAAAGCTGC
TCAACCTGAAGTACAAAGGAAAGACAGCAGCCGACAATGTGAAGATCAGC
GCTTTGGAGCTGAAGCCCAACTTTAAGCTTATGATGGTGGGCTCCACAGA
GGCCGATATCGAGGATGCGTGCAGCCTGCCCGATAATATTGGCGAAGTGG
TCGACGACTTCGATGACGCCGATGAACGCGAAGAGTCCGTGGAGCACTCC
GCCGTCTATTTGGCCAAGGTGCAGCGTCGTGTGCGAGACTACAAGATCAA
GGAGTTAGCGCCGCCGCGTGAGGGCAAGAAGCTGCTTGTCCTGGACATAG
ACTATACCCTATTCGATCACCGATCGCCTGCTGAAACAGGCACGGAGCTA
ATGCGTCCGTATCTGCACGAGTTTCTGACTTCCGCCTACGAGGACTACGA
CATTGTCATCTGGTCCGCCACCAGCATGCGCTGGATCGAGGAAAAGATGC
GCCTGCTGGGCGTGGCCAGTAACGATAACTACAAGGTGATGTTCTATCTG
GACTCCACCGCCATGATATCAGTTCATGTGCCGGAGCGCGGTGTGGTGGA
CGTAAAGCCGCTTGGTGTAATCTGGGCCCTGTACAAGCAATACAACTCGA
GCAACACTATCATGTTTGATGACATCCGTCGCAACTTCCTTATGAACCCA
AAGTCCGGCCTAAAGATCCGCCCATTCCGTCAGGCTCATCTCAACCGTGG
CACGGACACCGAGCTGCTCAAGTTGTCCGACTATTTGCGCAAATCGCTCA
CACTGCCCGGATTTCAATTCGCTAAACCATCGCAGTGGGAGCACTACCAT
CCCAGAGACTCGGCAGCTTTCTAGACCATCGTTTGGCGCGCGGGCCCAGG
TAGTGGTCATAATCATATCTAATCATAATCATAATCACAACTAGGCTAGG
AGATCTGTCATGACTAATGCTGATTCTCCACATAAAACGTCGGCGCACGA
GCGTCTGACAATCCATGGATTCGAGGTCATTGCTGG
UFO01844.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ublcp1-RA | 1202 | CG6697-RA | 168..1116 | 9..954 | 4670 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23061875..23062665 | 167..954 | 3805 | 99.6 | Plus |
| 3R | 32079331 | 3R | 23061660..23061820 | 9..169 | 805 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:41:13 has no hits.
UFO01844.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:05:03 Download gff for
UFO01844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6697-RA | 158..1117 | 1..958 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:29 Download gff for
UFO01844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ublcp1-RA | 160..1119 | 1..958 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:25:39 Download gff for
UFO01844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ublcp1-RA | 160..1119 | 1..958 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:25:39 Download gff for
UFO01844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23061652..23061819 | 1..168 | 97 | -> | Plus |
| 3R | 23061877..23062665 | 169..954 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:29 Download gff for
UFO01844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18887374..18887541 | 1..168 | 97 | -> | Plus |
| arm_3R | 18887599..18888387 | 169..954 | 99 | == | Plus |
