UFO01848.5prime Sequence
1142 bp (1022 high quality bases) assembled on 2008-10-31
> UFO01848.5prime
CAGTCGACATGTTGGCCCACAGGATGCAGCTTTGGAGGACAACAAACGCG
GCAATGGCCATGACTTCCGCAGCCGGCCGTTTCACCCCACAGGCATCCAC
GGGCAGCAGGAGAGATCTCTACCTCCAAAGGATTACCAGGGGCAGCAGTC
TGCCCTTAGCGGCCCCCGAAAAATGGTCCAATCTCGGCCAGCTTCGTTTC
GCCAGCGGTGGAGCAACTGCAGCGGGAGTTTCAGCCACCAAAGGCGAGGA
GTTCATGCAGGCTGTGCCGAAAACGGAACTAGTGGATCTGCCGGACATAC
CCGCCGCTCCAGTGCCTCCACCCGCCGATGGTCTGAATGTAATGGATGTG
ATGAATGCCGCTGGCGAACCCTCCTTCGCCTCCATTGGCTTGGGCGGCTG
GTCTCCGGTGGGCATGGTACAGAACTGTTTGGAATTCTTGCACTGCACGT
GGGATATTCCCTGGTGGGGAACCATCGCCATTGGAACACTCGCAGTGCGA
ACCATAATCTTTCCATTGGTCATCTTGGCCCAAAGGAACTCTGCCAAGAT
GAACAACAATATGCCGCAGATGCAGATGCTGCAGCTGAAAATGACCGAGG
CCAGGCAGTCGGGAAACGCCATTGAGTCCGCTCGTTATGCCCAGGAAATG
ATGCTGTTCATGCGGGAGAAGGGTGTCAATCCGCTCAAGAACATGGTAGT
TCCCTTGGCCCAGGCACCGCTCTTCATTAGCTTCTTCATGGGACTGCGAC
AGATGGCTAACGCGCCGGTCGAATCAATGCGGGATGGCGGACTCTTCTGG
TTCACGGATCTCACAATGGCGGATCCCTTCTATCTACTGCCCTTAATCAC
CAGTGCCACGTTGTACCTGACCATTGAGATCGGAACGGATTCGGCTCGCT
TATCGGCTGCCAACATGAACACCATGAAATATGTGCTCAGAGCCCTGCCC
ATTGTTATCTTCCCGTTTACGATGAACTTCCCCGCTGCCATTTTGACCTA
TGGGGCGGGCAGTACTTTATATCGTTGGGGCAGGTGGGGGTGCTAAGGAT
CCCTCGGTGAGGGAGTACTTCAGATCGAAAGATGCTTGACCCATGGCTAA
GTGCACTGCACCTAGAGATTCGTCGCGGAATGAAGGATCCTG
UFO01848.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6404-RA | 1605 | CG6404-RA | 66..1210 | 9..1142 | 5320 | 98.3 | Plus |
| CG6404-RB | 1815 | CG6404-RB | 277..1421 | 9..1142 | 5320 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10884809..10885793 | 1072..90 | 4750 | 99.3 | Minus |
| 3L | 28110227 | 3L | 10885901..10885985 | 93..9 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:18:44 has no hits.
UFO01848.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:05:11 Download gff for
UFO01848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6404-RA | 307..1451 | 9..1142 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:06 Download gff for
UFO01848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6404-RB | 277..1421 | 9..1142 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:08 Download gff for
UFO01848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6404-RB | 277..1421 | 9..1142 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:08 Download gff for
UFO01848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10884733..10885790 | 93..1142 | 97 | <- | Minus |
| 3L | 10885902..10885985 | 9..92 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:06 Download gff for
UFO01848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10877833..10878890 | 93..1142 | 97 | <- | Minus |
| arm_3L | 10879002..10879085 | 9..92 | 100 | | Minus |
