UFO01849.5prime Sequence
1139 bp (1014 high quality bases) assembled on 2008-10-31
> UFO01849.5prime
CAGTCGACATGAAAACCTTGAATCTTTTGGCACCTGTTTCACAATTGTTG
AAGCCCCTTCGAAGGCAAAGTTCTTCGCGCGTAAACGCCCTTTTGATAAA
TGTTCCTAGAGTTCAGCTTTCTAAAGGCAAGAACAAGTACCTTTTGATGA
TGATTCACATGCACGGTTTAACTAGGTTCGGCAGGACCATTGTAAGAGGA
TCCGCCTCCAAGGACCACGAGGAAATCTTTGAGGAAATCCAAAAGGAGAT
GGACAAAATTGGAATTTGCGCCAAATGCCTGGGTGGAGGGTTCATCAGCA
ACAAGGAGGACAAGAAAGTAATGAAAATTTACGGGTGCTGCAAGACTTTT
GGGGAGGCGCCGCACGGCAGGACGAAGGACATACTGCTGTCTTGGACCAA
ATTCCAGCATTACAACATCATCTTGCCCAAAAAGAATCTGAACGCGTATC
AGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGT
CATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATC
CTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGC
AACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGA
TCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCT
GCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGG
AAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCAC
CTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGA
AGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAG
GGATTGGCTGAGACGAAAAACATATTCTCATAAACCCTTTAGGGAAATAA
GGCCAGGGTTTCACCGTACACGCCACATCTTGCGAATATATGTGTAGAAA
CTGCCGGAAATCGTCGGGTATTCACTCAGAGCGATGAAACGTTTCAGTTT
GCTCATGAAACGGGTGTACCAGGTGAACCACTATCCATATCACAGCTCAC
GTCTTTCATTGCCAACGATTCGATGAACATTCATCAGGC
UFO01849.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:18:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ocn-RA | 619 | CG7929-RA | 86..529 | 9..452 | 2220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:18:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30037435..30037645 | 219..9 | 1055 | 100 | Minus |
| 3R | 32079331 | 3R | 30037256..30037381 | 344..219 | 630 | 100 | Minus |
| 3R | 32079331 | 3R | 30037093..30037202 | 452..343 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:18:35 has no hits.
UFO01849.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:04:58 Download gff for
UFO01849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ocn-RA | 86..539 | 9..461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:09 Download gff for
UFO01849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ocn-RA | 86..539 | 9..461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:10:53 Download gff for
UFO01849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ocn-RA | 86..539 | 9..461 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:10:53 Download gff for
UFO01849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30037093..30037200 | 345..452 | 100 | <- | Minus |
| 3R | 30037256..30037380 | 220..344 | 100 | <- | Minus |
| 3R | 30037435..30037645 | 9..219 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:09 Download gff for
UFO01849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25862815..25862922 | 345..452 | 100 | <- | Minus |
| arm_3R | 25862978..25863102 | 220..344 | 100 | <- | Minus |
| arm_3R | 25863157..25863367 | 9..219 | 100 | | Minus |
