UFO01851.5prime Sequence
1137 bp (1012 high quality bases) assembled on 2008-10-31
> UFO01851.5prime
CAGTCGACATGAAGGTGCAGGACATGGACAAATGTGCTCCCAGCAGCGAC
TGGAACGTTCTTTACTGGGTGCTGGGCACGGTCCTGATGCCGGTGGCACT
TCCACTGGCCATCATCAACATTTGGCAGCGATTCCAGGCCCAGAAATTCC
GCAATCAATTGCCCGGCAAGGTGGTGCTCATCACGGGGGCCAGTTCGGGC
CTGGGCGAATCTCTGGCCCACGTCTTCTACCGCGCTGGATGCAGGGTTAT
TTTGGCGGCACGTCGCACTCAGGAATTGGAGCGGGTTAAGAAGGACCTCC
TCGCATTGGATGTGGATCCCGCTTATCCGCCGACAGTGCTTCCCCTGGAT
CTGGCTGAACTGAACTCCATTCCAGAATTTGTCACCCGGGTGCTGGCCGT
GTACAACCAAGTGGACATACTCATCAACAACGGAGGGATCAGTGTGCGAG
CCGATGTGGCATCCACGGCAGTGGATGTGGATCTCAAGGTGATGGTGGTT
AACTACTTTGGCAGCGTTGCCCTGACCAAAGCTCTACTTCCTTCGATGGT
GAAACGTGGTAGTGGTCACATATGCTTCATTAGCTCTGTTCAGGGAAAGT
TTGCCATTCCCCAAAGGGCTGCCTATTCCGCCTCGAAACATGCCATGCAG
GCTTTTGCCGATTCCCTGCGAGCCGAGGTGGCAAATAAGAACATAAACGT
GTCCTGCGTGAGTCCTGGCTACATACGCACCCAGCTGTCCTTGAATGCAT
TGACAGGATCGGGAAGCAGTTACGGCAAAGTGGATGAAACCACGGCCAAA
GGCATGTCACCGGATAAACTTGCAGACGCATTCTGCAGTGCATTCTTCGC
AAAGAACCGGACATTATTGTCAGCGATGTCCAGGCCCAGATCGCCTACTA
TCTTCGTCATCTTTGCCCGAGTCTCTACTTTTGGATCATGGTCAGCGCGC
GTCAACTGGAGATGCTGAGAAAGTCACTGCAGCTTTCTAGACCATCGTTT
GGCGCGCGGGCCCAGGTAGTGGTCATAATCTATCATAATCTATCTAATTC
CACTAGCTAGGAATCTGGTCATGACTATGCTGGATCCACAATAAAGTCCG
GGCGCACGAGCGTCTGACAATCGATGGATCTGGAGGT
UFO01851.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7601-RA | 1250 | CG7601-RA | 95..1063 | 9..972 | 4675 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29735714..29735961 | 777..530 | 1240 | 100 | Minus |
| 3R | 32079331 | 3R | 29736016..29736233 | 531..314 | 1090 | 100 | Minus |
| 3R | 32079331 | 3R | 29736487..29736651 | 173..9 | 825 | 100 | Minus |
| 3R | 32079331 | 3R | 29735491..29735655 | 941..778 | 745 | 98.2 | Minus |
| 3R | 32079331 | 3R | 29736289..29736435 | 315..169 | 735 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:29:58 has no hits.
UFO01851.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:04:56 Download gff for
UFO01851.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7601-RA | 170..1138 | 9..972 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:53 Download gff for
UFO01851.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7601-RA | 95..1063 | 9..972 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:36 Download gff for
UFO01851.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7601-RA | 95..1063 | 9..972 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:36 Download gff for
UFO01851.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29736016..29736232 | 315..531 | 100 | <- | Minus |
| 3R | 29736290..29736433 | 171..314 | 100 | <- | Minus |
| 3R | 29736490..29736651 | 9..170 | 100 | | Minus |
| 3R | 29735491..29735655 | 778..941 | 98 | <- | Minus |
| 3R | 29735714..29735959 | 532..777 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:53 Download gff for
UFO01851.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25561213..25561377 | 778..941 | 98 | <- | Minus |
| arm_3R | 25561436..25561681 | 532..777 | 100 | <- | Minus |
| arm_3R | 25561738..25561954 | 315..531 | 100 | <- | Minus |
| arm_3R | 25562012..25562155 | 171..314 | 100 | <- | Minus |
| arm_3R | 25562212..25562373 | 9..170 | 100 | | Minus |
