UFO01853.5prime Sequence
1121 bp (1006 high quality bases) assembled on 2008-10-31
> UFO01853.5prime
CAGTCGACATGGGCCTTGGAAGCGGTGACAGGGTAAATGAAACCGACCAC
TTCAGCTTTCCCGCAAGCTGGCAGGACAACGGTAGAATGCAGGTGCAGTT
CGCCATGTTTCGATCGAGGCATCTGGATGCGGAGGGCTACGACGCAAAAA
TGAATTTCTGGATGGATTTAATTGCAAAATATCTAAAGTTCAGCGGACGA
CCAATCTTCAGCCTGCGGGATCTGCAACTGCTGTTCATGAGGGGTGACCA
ACTGCCCGCCTGCCTGGACACCGTGATATCCGAGATGCAGCAGAGGAAGC
AGATCCGCTCTCGCAGTGAATTTGAGTACGATCCGGCCAATTCCTGGGGT
GGTTGGCTCGTCAACAGCCTGGTAAAGCGCCCCCTTTCATGGAGCTGGTC
GAAAATCAAGCACAGCGTGGTGACGGAGGACCTGGAAGCCTCCGCTTTAA
TTGAATGGATTCACCTAGATGCCTTAAACAACACTTGCGATCTCATCGCC
GAAAAAGTCCTGTCGGAAAACACTGGAAAACTACTGCACTTTAATGCTTT
GAAAACGCTTTGTAAGACTCACGGAGTTCCCACTTACTCAGACAAAGATC
TATGCGCTTGCCTGTTGGCCTTAAATGTTCGTCAAATCTTGGGCCTAGAA
TTTAAAGTAGAAAAAGGCATACGCCAAATTCACTTGATCAAAATACCAAA
AAAACCTGGCGACGATCTTAATATAAGCCAAGAAGACCAGGCCGTCCACA
ATCTTCAGAATACCCAAGCTCAGTTACTCAAGCAGTTGGAGGACCTAGAG
GAGGAGATCAAGGTGAACGATGACAAAGTGCGCCAGTACATGAAGAGACA
AACGGCAAATGGCAAAACCTATCTACGAAAAGGCATCTCCTGGAAAAGAT
CATGAACGTCGCAGTCTTGCCCTGCACACATCGAATCTCTTCTGTCCAGT
GTGATGAGCCAGACAGTGGCGTTGTTCTGGATGCCTACAGATCGGATCAA
TACTTGAAGAGGTTCTCTCGAATTCTGGATGAAGTACGACATGTCGACGA
GTATTGGCCGATGTGCGGACCGCTCGACAGCATCGGAGTTCAGGAACATA
TGTCATACGTGTGGAACGCGG
UFO01853.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:39:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5498-RB | 1523 | CG5498-RB | 87..1195 | 9..1095 | 5015 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:39:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20383553..20384023 | 479..9 | 2355 | 100 | Minus |
| 3L | 28110227 | 3L | 20383281..20383500 | 699..480 | 1100 | 100 | Minus |
| 3L | 28110227 | 3L | 20383016..20383219 | 899..700 | 825 | 97.1 | Minus |
| 3L | 28110227 | 3L | 20382765..20382941 | 1068..904 | 325 | 92.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:39:44 has no hits.
UFO01853.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:04:54 Download gff for
UFO01853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5498-RB | 72..1189 | 9..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:35:03 Download gff for
UFO01853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5498-RB | 87..1204 | 9..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:04 Download gff for
UFO01853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5498-RB | 87..1204 | 9..1104 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:04 Download gff for
UFO01853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20382724..20382940 | 905..1104 | 91 | <- | Minus |
| 3L | 20383010..20383219 | 700..904 | 97 | <- | Minus |
| 3L | 20383281..20383500 | 480..699 | 100 | <- | Minus |
| 3L | 20383553..20384023 | 9..479 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:35:03 Download gff for
UFO01853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20375824..20376040 | 905..1104 | 91 | <- | Minus |
| arm_3L | 20376110..20376319 | 700..904 | 97 | <- | Minus |
| arm_3L | 20376381..20376600 | 480..699 | 100 | <- | Minus |
| arm_3L | 20376653..20377123 | 9..479 | 100 | | Minus |
