UFO01854.5prime Sequence
1095 bp (998 high quality bases) assembled on 2008-10-31
> UFO01854.5prime
CAGTCGACATGACAATCTTGTGGCTGACCTTGCTGGGCCTTTGTCTCAAT
CTGAAACTCGGGTCGGCGTTGCACGTGCCGCAGCATAATTGTGAGAGGTA
TTTCTCCTACTACAAAGAGGACAGTGGAGCCTACATTGGCGTCTTCACGG
CGCCACGCGCTGGTGTGAACAGCCTATCATGGGAGGTGGTTTTCACTGCT
CACGGAACTGGTGAGGCAAACACTGTGGGCTCACTCATTCCGTATCCCAA
TAAGGAAAGGGCCTTTGAAAAGATACACAGCGGAGAACGTGGCGAGGTGT
TTGTGCGTTTCACGGATTTTGGAAACGAGCTGCCCAAACTTGTCCGGGCG
GAATTCAACGGCGAGGTTCTGTGTCAAAATGAGGAGTATGATGCCCCTTC
AAGCACAATGACCCGACGCCAGTCCATGTCCACCTCAACGCCAATTAGTC
AAAAGTCAGCACCAAGAGAAATAGTGCGTCAGCGGCGTCCGCCGCCGAGC
ACACCGAGCAATGACCCCAATCCTTTCCTTCCTTCAATCATGCCCAGAAT
AGATTCGGACTTTGAGGAATGCGGCGTTGAGGGCTTTTCGCCTCTTCAAA
TCGGAGGCGACCTGGTGACCCGCGGTCAGTACCCCTGGCTCGCGGCCCTT
TACGAAGGTGTTGGCACGGCTACATACAAATGCGTGGTGTCGGTTATCTC
CAAACGGACTGTGATCACGGCAGCTCACTGCATTTATGGAAAGAGCGCCA
GCCAGCTTTGGGTCTATTTGGGCAGGCATGATCGCAACGAGAATCCTGAG
AATGGAGCCTCCCTGGTTAGCGTGACCAGCGTGCTGACTCCGTCCGCCTA
CGAGGGCAATCCAGTTCCGGATGCGGACGTTGGTCTGCTGGTGCTGACCT
CTCCGATGGTGTACACCAAGTACATTCGACCCTCTGCCTTTGGGGCTCAT
ATGGGATGCCACCGAATGAGGCGATACTGGAGCAGTAGCGTGGGGCTACG
ACGGAGTGCCCAGAAGACGCGATTCCAGACAGTGGATGTCGATGGTGCCG
GGATCATGTCTCAAGAAAATGAGCGCGGAGACTCATCAGCGGCGA
UFO01854.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9631-RA | 1449 | CG9631-RA | 47..1127 | 9..1072 | 4945 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14225479..14226121 | 1021..388 | 2855 | 98.4 | Minus |
| 3R | 32079331 | 3R | 14226505..14226716 | 220..9 | 1045 | 99.5 | Minus |
| 3R | 32079331 | 3R | 14226261..14226438 | 391..214 | 875 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:18:36 has no hits.
UFO01854.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:04:53 Download gff for
UFO01854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9631-RA | 23..1068 | 1..1034 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:02 Download gff for
UFO01854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9631-RA | 36..1081 | 1..1034 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:05 Download gff for
UFO01854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9631-RA | 39..1084 | 1..1034 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:05 Download gff for
UFO01854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14225427..14226121 | 388..1065 | 97 | <- | Minus |
| 3R | 14226265..14226436 | 216..387 | 100 | <- | Minus |
| 3R | 14226510..14226723 | 1..215 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:02 Download gff for
UFO01854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10051149..10051843 | 388..1065 | 97 | <- | Minus |
| arm_3R | 10051987..10052158 | 216..387 | 100 | <- | Minus |
| arm_3R | 10052232..10052445 | 1..215 | 98 | | Minus |
