UFO01855.5prime Sequence
1139 bp (1033 high quality bases) assembled on 2008-10-31
> UFO01855.5prime
CAGTCGACATGTTCATTCCCACACACCTTATTTGCAATACTAATCCGGCT
GTAAAGTCTGCCGTCAAATCGGTTAAGGAGGGCTCGCGGGGCATGAAGAC
CGCCTATAAGGGATTCAAGACAAAGCTGCGCGAGAACGGAAACCAGTTTG
GTGGCACGCACTTCCACTTTGGACTTGGCTCCCCGAATCATTCGGATCGT
CCTGACGGCACCAGCGGAGGATACGTTCGTGGTGGCAAGGCCATCGGGGC
TGCACACCACTCGGCGCCCAGTTCTCCAGTGACCAGCAAGCGTCTTGATG
GAATTGCCTCCGTCACGGGAAGCAGCGGCAGCGGTGGATCCGGCGCCAGG
GAGCCGCGGGAGTTCCTGCGACGCGGTCCCGTCCCGCTGGCCATGTCTAG
CTCGAGCAGCCACATTCAGCCGAACGGCCATGCGTACGGTGCGAGTGCTG
GTGCTCATTATGGTCATCATCTCGCTGCGTCTCCTGCTGTTAGCTCGGCG
AGCTCGCTCTGCTCATCTTCGGAGATGAACCTGTCGCAGGAACTGCAGAA
CCATCCGCTTTTCAAGACGCCGGCAGTGGACCGCAGCCTTAAGCCAAACG
CAGAGCACAGGCGAGGAGCAGCACCGCCAGCCCGTCCACCGCCACCGCAA
TCTACGCCCGCCTCCTACTACAATCATCCCTATGCCGCGCATCCGCACGT
GGAGTCTAAGCCGCCAAGGCACACCTCCACGCCCACCAGACCGCGTCAGC
CCCTGCCTACCGCCGATTCCAGCAGCTTTGATAGTCCGCCGGACGTACAA
TCTCCACCGATTCCGCCCCGGAGGCAGGCAGCTCGAATGCGATTGTGGCG
GCCACGGCTGCAGCCGTCAGTGCAGAGATTAGCAACTGGACGTAACTGCT
GGAAGGACGAGCCCGGAAATGATTCTGTACGCAGCTCGAATGCATCCTCG
TCATCGGCGACTCATCCTCTCGGGCGCATCGTTGTGACGGCGGCGTCGAC
GTTCTCGCATCTTAATGGTGTCTGATCCGCCCATCGACACGCGGGTCAGA
GAAGAACCACAGCAGCCACTGAAGAAAGCATGATGATCTTGAATATCGCT
TGAAGATGCACAAACAGCTTCGACTTGAGAACTTCGAAT
UFO01855.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18659-RE | 3655 | CG18659-RE | 1758..2899 | 9..1137 | 5080 | 97.4 | Plus |
| CG18659-RA | 3519 | CG18659-RA | 1648..2763 | 35..1137 | 4935 | 97.2 | Plus |
| CG18659-RI | 3513 | CG18659-RI | 1648..2757 | 35..1137 | 4875 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9125551..9126067 | 587..71 | 2585 | 100 | Minus |
| 2R | 25286936 | 2R | 9124769..9125220 | 1034..588 | 1915 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:41:09 has no hits.
UFO01855.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:04:51 Download gff for
UFO01855.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18659-RB | 624..1724 | 1..1092 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:26 Download gff for
UFO01855.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18659-RE | 1750..2850 | 1..1092 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:25:34 Download gff for
UFO01855.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18659-RE | 1750..2850 | 1..1092 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:25:34 Download gff for
UFO01855.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9124744..9125220 | 588..1054 | 97 | <- | Minus |
| 2R | 9125551..9126066 | 72..587 | 100 | <- | Minus |
| 2R | 9126181..9126213 | 39..71 | 100 | <- | Minus |
| 2R | 9127027..9127062 | 1..38 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:26 Download gff for
UFO01855.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5012249..5012725 | 588..1054 | 97 | <- | Minus |
| arm_2R | 5013056..5013571 | 72..587 | 100 | <- | Minus |
| arm_2R | 5013686..5013718 | 39..71 | 100 | <- | Minus |
| arm_2R | 5014532..5014567 | 1..38 | 92 | | Minus |
