UFO01856.5prime Sequence
1129 bp (1016 high quality bases) assembled on 2008-10-31
> UFO01856.5prime
CAGTCGACATGTCGCTTAAAAAGGCTCTCGACGATTGCATGATCGATTTC
GATCGCTGTGTGCTGGTCACCGATCTTCTGGAGGAGTACAAACTGTCCTA
CAAGGAGGTGAACGATGTGCTGGAGGCCTACATCAAAGAGCAGGAACCTG
CCACAAAATTCGAGAAGAGATTTCTAGTCCATGGCAAGCGTAAAACGCAA
GGATCCGATTCCGGCGAAGATCTGTACTCTGTGGTGCTGGAGAGCAGGAT
GCAGGATTGGCTGGCCAAAGTCCAGGATGCGGAGTCTCAGCTGTATAGTG
TGAAAATAGCCGGTGGCACCAAAGCGCCGGCTGCGATTTTCAAGCCCATG
CAGCATTTGGAGGTGAAGTTGGCAAAAGTGGAGCAGCGTCCTGGAGCGGG
AAAGATAGTGCCCAGTGCAAATGGGACGACTCCCCACAATGGAGTCAAAT
CTGAACCCACTAAATCGGAGCCATCAAAGTCTGCGGTTAAGTTGGAGCCT
TCAAAATCTTCACTTAAATCAGAGCCAGCAAAGTCGAAGGCGGAAAAGCC
AGTGGCCAGCAAGTCCTCTCCGGAGGATAAGAAGACCTCGCCCAAGGAAC
AGGCCTCTAAAGCCAAGCCTGCAGCAGCCAAAAAGGGTAGCATTAATAGC
TTCTTCACAGCGGCGGCCAGCAAGCCAAAGGATGTCAAAGCCACGCCCAG
CAAATCGACGTCCGGCACCGTGGACAACTTCTTTAAGAAGCAACCGGCAG
GCGCCAAGAAGTCGCCACCGGAATCCGAAGATAAATCGAAGAAAGATGCT
TCCAATTCAAACAAAAAGGAAGCCTCGAAAAAGAAATCCCCCAGTCCCAC
CAAAAAGCCAACAACGGCAAACACTTCCATGCAACTGTTCGACGAGGAGA
GTGCCGAATCGTCCGACGAGGAGGAAAAGCTGGACATGCTGCGGCGGAAG
GTGATCGAGTCGACACGACTCCGATCAGGAAAGGCCTCGTCCTCCAGCGC
GACGATCACGACTCTGAGACGAGGAGCAGCCGCCAGAAGTCCGCCGATGA
AGAGACCATCGCATTGATGAAAATGATACGACGCAATGAACTATCTGATG
AAAATGCTTCGTCATTACGCACGTTACAC
UFO01856.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pol32-RC | 1391 | CG3975-RC | 36..1177 | 3..1121 | 5155 | 97.8 | Plus |
| Pol32-RB | 1486 | CG3975-RB | 36..1177 | 3..1121 | 5155 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15255196..15256269 | 1066..3 | 4900 | 98.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:41:06 has no hits.
UFO01856.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:04:50 Download gff for
UFO01856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3975-RA | 34..1185 | 1..1129 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:24 Download gff for
UFO01856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pol32-RB | 34..1185 | 1..1129 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:25:32 Download gff for
UFO01856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pol32-RB | 34..1185 | 1..1129 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:25:32 Download gff for
UFO01856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15255120..15256269 | 1..1129 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:24 Download gff for
UFO01856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15255120..15256269 | 1..1129 | 97 | | Minus |
