UFO01857.5prime Sequence
1129 bp (999 high quality bases) assembled on 2008-10-31
> UFO01857.5prime
CAGTCGACATGTTCGCCAGCAACACGCGTAATCTTATGCGCAGCAGCATT
TTGCAGCGATGCAAGAGCACTTTGGTGGTGGCTGAGCACAACAATGAGGT
ACTCAATCCGATCACCCTGAACACCATCTCTGCGGCCAAGAAGATCGGTG
GTGACGTCACAGTTCTGGTGGCAGGCACAAAATGCGGACCCGCTTCCGAG
GCTCTTTCCAAGGTGGATGGCGTGACCAAGGTTCTGGTGGCCGAAAATGC
CGCCTTCAACGGATTTACCGCGGAGTCGCTGACCCCATTGGTCCTGGCCG
CCCAGTCTCAGTTCAAGTTCACCCACATCCTGGCCGGAGCTTCGGCTTTC
GGCAAAAACGTGCTGCCACGCGTGGCGGCCAAGCTGGATGTGTCGCCCAT
TTCGGAGATCATCGATGTTAAGTCGGACGACACCTTTGTGCGCACTATCT
ACGCCGGAAATGCTATCCTCACCCTGAAATCCAAGGACGCCGTTAAGGTG
ATCACCGTAAGGAGCACCAATTTCCCACCGGCAGCCACCAGCGGTGGAAG
TGGAGCCGTGGAGCAGGCACCAGCTGGTGACTTCGCCAGCAGCCTGTCCG
AATTTGTATCCCAGGAGCTGACCAAGTCCGATCGCCCCGAGCTGGCCGGA
GCCAAGGTTATTGTGTCCGGAGGACGGGGCCTGAAGTCCGGAGATAACTT
CAAGCTGCTGTATGATCTGGCCGATAAGTTTGGTGCCGCTGTGGGTGCCT
CTCGTGCTGCCGTGGATGCTGGATTTGTGCCCAATGATCTGCAGATCGGT
CAGACCGGCAAGATTGTGGCTCCCGAGCTGTACATCGCTGTCGGAATCTC
AGCGCCATCCAGCACTTGGCTGGCATGAAGACTCCAAGACGATTGTGGCC
ATCACAAGATCCCGAAGCGCCATCTTCCAGGTCGCCGATATGCATCGTGC
AGATCTTTTCAAGGCCGTGCCGAACTAACCGGAAAGTTGGCAAGCTTTCT
AGACATTCGTTTGGCGCCGCGGGCCCAGGTAGTGTCATAATCATAATCAT
AATCTAATCATATCACACTAGGCTAAGGAAATTCTTGGTCATGGAACTAT
GGCTGAATTCCCACACAATAAAACGGCCG
UFO01857.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wal-RB | 1579 | CG8996-RB | 77..1066 | 9..989 | 4735 | 99.1 | Plus |
| wal-RA | 1212 | CG8996-RA | 77..1066 | 9..989 | 4735 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11689082..11689888 | 989..192 | 3625 | 98.6 | Minus |
| 2R | 25286936 | 2R | 11690445..11690586 | 192..51 | 710 | 100 | Minus |
| 2R | 25286936 | 2R | 11690678..11690719 | 50..9 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:32:46 has no hits.
UFO01857.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:04:48 Download gff for
UFO01857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wal-RB | 24..1025 | 1..994 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:25 Download gff for
UFO01857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wal-RA | 69..1070 | 1..994 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:05 Download gff for
UFO01857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wal-RA | 69..1070 | 1..994 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:05 Download gff for
UFO01857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11689082..11689888 | 192..989 | 98 | <- | Minus |
| 2R | 11690446..11690586 | 51..191 | 100 | <- | Minus |
| 2R | 11690678..11690727 | 1..50 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:25 Download gff for
UFO01857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7576587..7577393 | 192..989 | 98 | <- | Minus |
| arm_2R | 7577951..7578091 | 51..191 | 100 | <- | Minus |
| arm_2R | 7578183..7578232 | 1..50 | 92 | | Minus |
