UFO01860.5prime Sequence
1112 bp (998 high quality bases) assembled on 2008-10-31
> UFO01860.5prime
CAGTCGACATGAATAGTTTAGAAGTAAATGAGTCTGATGCTGCTCCAGAA
GCATCACCCAACCGAAATCCTTCAGTGGATTCGGGTCCTGGCTTTGTCAG
GCTGAAAACCAGGCAAAAGAAGCTGCTGCGAAAGGCTCTTCATGGAGGGC
TGACCAGAGAAAAGGCTCTGGAGGTGGTGCAAGCTCTTCCCATAGTCAAG
GGACTCCTACCCGATCCTTATGAAAACCAAACCGCCAATCCGTACCCCTC
GGGTTTAGTTGAGTGCGTGAGAATCGGCTTAGCTGCGGAGTCTGCTGGGA
CTTCCCTGACCAGCGAGCAAATGACCATGATCAAGGAGGCCATTATCGAC
GTCACCGTGGAGAAATCTGGCAGTCAGAAGCCCCAGTTCGAGGGATGTGT
GGCTCGAAGAGGATGGCTCCTTGTGACTTGTTCCAACTCCTCCACCTCAG
AATGGTTCAAACAAAATTTTTGCCACATCCAGTCGAAAGTAACCACTAAG
CTGAAGCTAATGGATGAGTCTGAACTGCCAAGGAGGAATGTCGTTCTCGG
ATATTTTCCAGATAGTCTAACCACCAGCAGCCAGAAGGTCTTGGAAATCA
TTCAGGCCCAGAACCCAGTCTCAACGGCGGAATGGAGGGTTATGAACAGG
TTGACCCACGGTGAGCTACTGCATCTTTCCATGGCAGTTGACAATGAATC
GCACAAGAAACTGATCGAACTGAATGGAACGATATCCTTTCGATTCGGGC
GTGTAAAACTTTGTTTGAAAAACTCCCTCGATAGGAAATCCGTACTAAAT
GGTAGAAAAGAAACGTCACCAAATAGAAAATCCCTGGACAAGGCTGCTGT
AAGTCGGGAAATTGTGCCTGCTCCGCAGAACCAGTGATCACAAATGATAG
TCCGTGAACCAATCCCATATCCTTGCTCAGTCATAGTATCCTATGATGCA
GTGAATCACACAGATGCTCAGTATGATCTATAGTCAAGGACTCCGCCGAC
CTTTTGCATGCAGCTATCGGGATGGCTATGGATGAGAGACGGAGCTGAAA
CCACGAACTTGCCAGACTGCCAAGCCTTCCTAGAACCATTGTGGCATCGG
CCAGTCACACTG
UFO01860.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2217-RD | 2233 | CG2217-RD | 387..1465 | 9..1061 | 4765 | 97.4 | Plus |
| CG2217-RC | 1768 | CG2217-RC | 387..1465 | 9..1061 | 4765 | 97.4 | Plus |
| CG2217-RB | 4135 | CG2217-RB | 387..1465 | 9..1061 | 4765 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30421636..30422585 | 953..9 | 4500 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:41:11 has no hits.
UFO01860.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:04:59 Download gff for
UFO01860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2217-RA | 387..1379 | 9..989 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:28 Download gff for
UFO01860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42740-RB | 387..1379 | 9..989 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:25:36 Download gff for
UFO01860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2217-RB | 387..1379 | 9..989 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:25:36 Download gff for
UFO01860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30421636..30422585 | 9..953 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:28 Download gff for
UFO01860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26247358..26248307 | 9..953 | 99 | | Minus |
