UFO01862.5prime Sequence
1115 bp (1013 high quality bases) assembled on 2008-10-31
> UFO01862.5prime
CAGTCGACATGTACCTCTTCACCAAGGCGAATCTCATACGCTTCCTAGCC
GGCGCGATATGCTTGTTGCTGGTGCTTAACTTTGTGGGCTTCCGTTCCGA
CGGAGGTAGCGCCACCTCCCTCAGCAAGCTCAGCATTCGGCGCGTGCACA
AGTATGCTCATATCTACGGGAACGCTAGCAGCGATGGAGCCGGAGGCAGT
GAAGCATCCAGGCTGCCCGCTTCCCCGCTCGCCTTATCAAAAGACAGAGA
GCGGGACCAGGAGCTCAATGGCGGACCCAACTCTACCATAAGAACTGTGA
TTGCCACGGCAAACTTTACTTCCATTCCACAAGACTTAACGCGCTTCCTG
CTGGGCACAAAGAAATTTTTGCCCCCGCGACAGAAATCCACATCCGCCCT
CCTTGCCAACTGCACTGATCCCGATCCCCGTGATGGTGGACCCATCACGC
CCAACACGACACTGGAGTCACTGGACGTTATTGAGGCGGAGCTTGGACCT
CTTTTGCGCCCTGGTGGCGCCTTCGAGCCTGAAAACTGCAATGCCCAGCA
TCACGTGGCTATTGTTGTGCCCTTCCGCGATCGATACGCCCATCTATTAC
TTTTCCTGCGCAACATCCACCCATTTCTGATGAAGCAGCGCATCGCCTAT
CGCATTTTCATTGTAGAGCAGACCAACGGGAAGCCCTTTAATCGGGCTGC
CATGATGAACATTGGTTATTTGGAGGCCTTAAAGCTGTACCAGTGGGATT
GTTTTATATTCCACGATGTCGATCTTCTGCCTTTGGACGACCGCAATCTT
TACAACTGTCCACGTCAGCCGCGACACATGTCAGTGGCTATAGACACGCT
GAACTTCAGGTTGCCTTATCGATCAATATTTGGAGGTGTTTCCGCAATGA
CGCGTGAGCACTTTCAGCCGTAAATGGTTCTCAAACTCGTTCTTTGGCTG
GGGCGCGAGGATGACGACATGTCCAACAGTGAAGCACGCAAACCTATTCA
TATCAAGGTTTCCGGTCACATAGCTCGCTACAAGATGCTGAGCATCAGAA
GGAAGGCATCTAGCGCTATGAACTTACGGATGGCATGACAATAGAACGAT
CATCACTTCGTAGAT
UFO01862.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beta4GalNAcTA-RA | 1867 | CG8536-RA | 134..1230 | 8..1088 | 5095 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14259715..14260140 | 435..860 | 2130 | 100 | Plus |
| 2R | 25286936 | 2R | 14259355..14259660 | 132..437 | 1530 | 100 | Plus |
| 2R | 25286936 | 2R | 14260195..14260398 | 858..1054 | 690 | 96.1 | Plus |
| 2R | 25286936 | 2R | 14259163..14259288 | 8..133 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:09:18 has no hits.
UFO01862.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:04:44 Download gff for
UFO01862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beta4GalNAcTA-RA | 124..1185 | 1..1054 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:18:18 Download gff for
UFO01862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beta4GalNAcTA-RA | 126..1187 | 1..1054 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:51:45 Download gff for
UFO01862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beta4GalNAcTA-RA | 126..1187 | 1..1054 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:51:45 Download gff for
UFO01862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14259357..14259658 | 134..435 | 100 | -> | Plus |
| 2R | 14259155..14259288 | 1..133 | 97 | -> | Plus |
| 2R | 14259716..14260139 | 436..859 | 100 | -> | Plus |
| 2R | 14260197..14260398 | 860..1054 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:18:18 Download gff for
UFO01862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10146660..10146793 | 1..133 | 97 | -> | Plus |
| arm_2R | 10146862..10147163 | 134..435 | 100 | -> | Plus |
| arm_2R | 10147221..10147644 | 436..859 | 100 | -> | Plus |
| arm_2R | 10147702..10147903 | 860..1054 | 96 | | Plus |
