UFO01869.5prime Sequence
1123 bp (1005 high quality bases) assembled on 2008-10-31
> UFO01869.5prime
CAGTCGACATGGCTCAGGAAGGTCAGGATATACCCACATTCAAGTGCGTG
CTAGTCGGCGATGGCGGCACTGGCAAGACCACCTTTGTCAAGCGGCACAT
GACCGGTGAGTTCGAGAAGAAGTACGTGGCCACACTGGGCGTGGAGGTGC
ATCCATTGATCTTCCATACCAATCGTGGCGCCATCCGTTTCAATGTGTGG
GATACCGCTGGCCAGGAGAAGTTCGGCGGGCTGCGCGATGGCTACTACAT
TCAGGGCCAGTGTGCCGTCATCATGTTCGATGTTACCTCGCGTGTCACGT
ACAAGAACGTGCCCAACTGGCATCGCGATCTAGTCCGCGTCTGCGAGAAC
ATACCAATCGTCCTCTGTGGCAACAAAGTCGATATCAAGGATCGCAAGGT
GAAAGCGAAGAGCATCGTCTTCCACCGAAAGAAGAACTTGCAGTATTACG
ATATTTCTGCCAAATCGAACTACAACTTCGAGAAACCATTCCTTTGGCTG
GCGCGCAAGCTGGTTGGTGATCCCAACCTGGAGTTTGTCGCCATGCCAGC
CCTGCTGCCGCCCGAGGTTAAGATGGATAAGGATTGGCAGGCGCAGATCG
AGCGTGACTTGCAGGAGGCCCAGGCGACCGCACTGCCCGACGAGGACGAG
GAGCTAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAG
TGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGA
GATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGG
CGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGTCATTACT
GGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGC
CCTGCCACTCATCGCAGTACTGTTGTAATTCATTAGCATTCTGCCGACAT
GAAGCCATCACAAACGCATGATGACCTGAATCGCAGCGCATCAGCACTTG
TCGCTTGCGTATAATATTTGCCCATGGTGAAACGGGGCGAAGAAGTTGTC
CATATTGTACGTTAATCAACTGGTGAACTCACCAGGATGCCTGAACGAAA
CTATTCCTCCATTAACCTAGAAT
UFO01869.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ran-RD | 1263 | CG1404-RD | 283..930 | 9..656 | 3225 | 99.8 | Plus |
| Ran-RC | 1581 | CG1404-RC | 134..781 | 9..656 | 3225 | 99.8 | Plus |
| Ran-RA | 1667 | CG1404-RA | 220..867 | 9..656 | 3225 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11145943..11146377 | 443..9 | 2160 | 99.8 | Minus |
| X | 23542271 | X | 11145652..11145867 | 656..441 | 1080 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:00:55 has no hits.
UFO01869.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:04:39 Download gff for
UFO01869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ran-RA | 196..857 | 2..668 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:47 Download gff for
UFO01869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ran-RB | 141..802 | 2..668 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:12 Download gff for
UFO01869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ran-RA | 214..875 | 2..668 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:12 Download gff for
UFO01869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11145644..11145864 | 444..668 | 97 | <- | Minus |
| X | 11145943..11146380 | 2..443 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:47 Download gff for
UFO01869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11039677..11039897 | 444..668 | 97 | <- | Minus |
| arm_X | 11039976..11040413 | 2..443 | 98 | | Minus |
