UFO01871.5prime Sequence
1102 bp (997 high quality bases) assembled on 2008-10-31
> UFO01871.5prime
CAGTCGACATGCCGCACGGACACTCTCACGATCACGGCGGCTGCAGCCAC
GAGGCCTCGGACGTGGACCACGCCCTAGAAATGGGCATCGAGTACAGCTT
GTACACCAAAATCGATCTGGACAATGTGGAGTGCCTGAACGAGGAGACGG
ATGGCCAGGGAAAAAGTGTCTTTAAGCCGTACGAGAAGCGCCAGGATCTG
TCCAAGTACGTGGAGAGCGATGCGGATGAAGAGCTCCTCTTCAACATTCC
CTTCACCGGCAACATCAAGCTCAAGGGCATCATCATAAGTGGGGCCAATG
ATGACTCCCATCCAAACATGGTCAAAATCTTCAAGAACCGACCCAGGATG
ACCTTTGATGATGCCAGAGCAAAGCCCGACCAGGAGTTCCAGCTGACCCG
CGATGCCCGCGGAGAAATCGAGTACTCACCCAAAGTGGTCACCTTCTCCT
CCGTGCACCATCTCTCCCTCTACTTTCCCAGCAATTTTGGCGAAGACATA
ACACGCATTTACTATATAGGTCTTCGAGGAGAGTTCACAGAAGCTCATTA
CCATGGCGTAACCATATGCAACTACGAATCCCGTGCCAATGCAGCGGATC
ACAAGGAAAAGGCTTTCGATGGAGTCGGCAGAGCCATCCAAGCAAGCTTT
CTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAA
TCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGAC
TAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTT
CTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAG
GAGTCCAAGCGAGCTCGATATCAATTACGCCCCGCCCTGCCACTCATCGC
AGTACTGTTGTATTCATTAGCATTCTGCCGACATGAAGCCATCACAACGC
ATGATGACTGATCGCAGCGCATCAGCACTGTCGCTGCGTATATATTTGCC
CATGTGAACGGGGGCGAGAGTGTCATATGCCACGTATCAACCTGGTGACT
CACCAGATGCTGAACGAAACTTTCTCATACGTTAGAATGCAGTACCGTAA
CG
UFO01871.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6153-RC | 821 | CG6153-RC | 91..723 | 9..641 | 3165 | 100 | Plus |
| CG6153-RA | 774 | CG6153-RA | 91..723 | 9..641 | 3165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12693083..12693402 | 9..328 | 1600 | 100 | Plus |
| 2L | 23513712 | 2L | 12693466..12693658 | 329..521 | 965 | 100 | Plus |
| 2L | 23513712 | 2L | 12693718..12693841 | 518..641 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:59:32 has no hits.
UFO01871.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:04:47 Download gff for
UFO01871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6153-RA | 98..737 | 9..649 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:16 Download gff for
UFO01871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6153-RA | 91..730 | 9..649 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:44:10 Download gff for
UFO01871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6153-RA | 91..730 | 9..649 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:44:10 Download gff for
UFO01871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12693083..12693402 | 9..328 | 100 | -> | Plus |
| 2L | 12693466..12693656 | 329..519 | 100 | -> | Plus |
| 2L | 12693720..12693848 | 520..649 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:16 Download gff for
UFO01871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12693083..12693402 | 9..328 | 100 | -> | Plus |
| arm_2L | 12693466..12693656 | 329..519 | 100 | -> | Plus |
| arm_2L | 12693720..12693848 | 520..649 | 96 | == | Plus |
