UFO01872.5prime Sequence
1123 bp (992 high quality bases) assembled on 2008-10-31
> UFO01872.5prime
CAGTCGACATGCCCCAGCTACAGAAGCCCGCTCCCGCATTCGCCGGCACC
GCCGTCGTCAACGGTGTTTTCAAGGACATCAAGTTGAGCGACTACAAGGG
CAAATACCTGGTGCTTTTCTTCTACCCGCTGGACTTCACCTTCGTGTGCC
CCACCGAGATCATTGCGTTCTCGGAGAGCGCCGCCGAGTTCCGCAAGATC
AATTGCGAGGTGATCGGTTGCTCCACGGACAGCCAGTTCACCCACTTGGC
CTGGATCAACACGCCAAGGAAGCAGGGTGGTCTGGGCAGCATGGACATTC
CACTGCTGGCTGACAAGTCGATGAAGGTGGCCCGCGACTATGGAGTGCTC
GATGAGGAGACTGGCATCCCCTTCCGCGGCCTGTTCATCATCGATGACAA
GCAGAACTTGCGCCAGATCACCGTCAACGATCTGCCCGTAGGTCGCAGTG
TGGAGGAGACCCTGCGTCTCGTCCAGGCCTTCCAGTACACCGACAAGTAC
GGCGAGGTCTGCCCCGCCAACTGGAAGCCCGGCCAGAAGACCATGGTGGC
CGATCCCACCAAGTCCAAGGAGTACTTCGAGACCACCTCCGCAAGCTTTC
TAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAAT
CATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACT
AGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTC
TGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGG
AGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGC
AGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAA
ACGGCATGATGAACCTGATCGCCAGCGGCATCAGCACCTTGTCGCCTTGC
GTATATATTTGCCCATGTGAAACGGGGGCGAAGAGTGTCATATGCCACGT
TAATCAAACTGGTGAACTCACCAGATGCTGAAACGAAAAACATATTCTCA
TAAGCCTTAGGAATAGCAGCTTCACGTACACGCCCATCTGCAATATGTGC
ACTGCGATCGGTTTGATTGCACT
UFO01872.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jafrac1-RD | 1080 | CG1633-RD | 207..789 | 8..590 | 2915 | 100 | Plus |
| Jafrac1-RE | 976 | CG1633-RE | 104..685 | 9..590 | 2910 | 100 | Plus |
| Jafrac1-RC | 1051 | CG1633-RC | 179..760 | 9..590 | 2910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13331122..13331703 | 9..590 | 2910 | 100 | Plus |
| 3L | 28110227 | 3L | 15208172..15208477 | 249..554 | 390 | 75.2 | Plus |
| 3L | 28110227 | 3L | 3043441..3043611 | 137..307 | 240 | 76 | Plus |
| 3L | 28110227 | 3L | 3043713..3043818 | 409..514 | 185 | 78.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:59:29 has no hits.
UFO01872.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:04:46 Download gff for
UFO01872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jafrac1-RA | 129..724 | 1..595 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:14 Download gff for
UFO01872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jafrac1-RD | 202..794 | 1..595 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:44:08 Download gff for
UFO01872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jafrac1-RD | 202..794 | 1..595 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:44:08 Download gff for
UFO01872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13331122..13331708 | 9..595 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:14 Download gff for
UFO01872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13225155..13225741 | 9..595 | 99 | == | Plus |
