UFO01873.5prime Sequence
1097 bp (990 high quality bases) assembled on 2008-10-31
> UFO01873.5prime
CAGTCGACATGGCTGCCACCCCAAGCGCACCCGCCAAGTCCGAGATGATC
GACCTGACCAAGTTGAGTCCGGAACAGCTGATTCAGATCAAGCAGGAGTT
CGAGCAGGAGATTACCAACGTACAGGACTCGCTGTCGACGCTTCACGGCT
GTCAAGCCAAGTACGCCGGATCCAAGGAGGCGCTGGGAACCTTTCAACCC
AATTGGGAGAACCGTCAGATCCTGGTGCCCCTGACCAGCAGTATGTATGT
GCCAGGACGGGTCAAGGATCTCAACAGGTTCGTCATAGACATCGGCACCG
GCTACTACATTGAAAAGGATCTGGAAGGCTCCAAAGACTACTTCAAGCGA
CGCGTGGAGTACGTGCAGGAGCAGATCGAGAAAATCGAAAAGATCCACCT
GCAAAAGACGCGCTTCTATAACTCAGTGATGAGTGTGCTGGAGATGAAGC
AGGCTGCTGCAGCGAAATTGCAGTCGCAGCAGCAATCGCAGCCGGCGGTT
ACCCAGAGCTCCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCA
GGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGC
CTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAAC
GCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGT
CATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTAC
GCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCT
GCCGACATGGAAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGC
GGCATCAGCACCTTGTCGCCTTGCGTATATATTTGCCCATGGTGAAAACG
GGGGCGAAGAGTTGTCCATATTGGCCACGTTTAAATCAAACTGTGAACTC
ACCCAGGATGCTGAGACGAAAACATATCTCATAACCCTTTAGGGAAATAG
CCAGTTTCACCGTACCCGCCCATCTGCATATATGTGTAGAACTGCGAATC
GTCTGCAATCCCTCGAGCGATGAAACGGTCAGTGGCTATGAACGGGG
UFO01873.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7048-RB | 894 | CG7048-RB | 256..759 | 9..512 | 2520 | 100 | Plus |
| CG7048-RA | 657 | CG7048-RA | 94..597 | 9..512 | 2520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22487508..22487720 | 106..318 | 1065 | 100 | Plus |
| 3R | 32079331 | 3R | 22487779..22487975 | 316..512 | 985 | 100 | Plus |
| 3R | 32079331 | 3R | 22487294..22487393 | 9..108 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:35:06 has no hits.
UFO01873.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:04:37 Download gff for
UFO01873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7048-RA | 82..593 | 1..512 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:13 Download gff for
UFO01873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7048-RA | 88..599 | 1..512 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:00 Download gff for
UFO01873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7048-RA | 86..597 | 1..512 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:00 Download gff for
UFO01873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22487286..22487392 | 1..107 | 96 | -> | Plus |
| 3R | 22487510..22487719 | 108..317 | 100 | -> | Plus |
| 3R | 22487781..22487975 | 318..512 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:13 Download gff for
UFO01873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18313008..18313114 | 1..107 | 96 | -> | Plus |
| arm_3R | 18313232..18313441 | 108..317 | 100 | -> | Plus |
| arm_3R | 18313503..18313697 | 318..512 | 100 | == | Plus |
