UFO01879.5prime Sequence
1130 bp (995 high quality bases) assembled on 2008-10-31
> UFO01879.5prime
CAGTCGACATGAAGATGGCTGACGGCTCGACCATATTGCGTAGGAACCGG
CCAGGCACAAAATCCAAGGACTTCTGTCGCTGGCCCGACGAGCCCCTGGA
GGAGATGGACAGCACGCTGGCGGTGCAGCAGTACATACAGCAGCTGATTA
AGCGCGACCCGAGCAACGTGGAACTCATACTGACCATGCCCGAAGCCCAG
GATGAGGGCGTGTGGAAGTACGAGCACCTGCGCCAGTTCTGCATGGAGCT
GAACGGCCTGGCAGTGCGGCTGCAGAAGGAGTGCTCGCCGTCGACGTGCA
CCCAGATGACAGCCACTGACCAGTGGATATTCCTGTGCGCCGCGCACAAG
ACGCCCAAGGAATGTCCGGCCATTGACTACACACGCCACACGCTGGACGG
TGCCGCCTGTCTGCTAAACAGCAACAAGTACTTCCCTAGCAGGGTGTCCA
TCAAGGAGTCGTCGGTAACCAAGCTGGGCTCCGTATGTCGGCGGGTGTAT
CGCATCTTCTCGCACGCCTACTTTCACCATCGTCGCATTTTCGACGAATT
CGAGGCCGAGACGTATCTGTGCCACCGTTTCACGCATTTCGTCACAAAAT
ATAATCTGATGTCGAAGGAGAATCTGATCGTGCCCATCAACGTGGGTGAA
AACGCGGCCCCTGGCGAAAGCGAGGCTGCAAGCTTTCTAGACCATTCGTT
TGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATC
ATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTC
TCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAG
ATGGAGTTCTGAGGTCATTACTGGATCTATCACAGGAGTCCAAGCGAGCT
CGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTGTAGTC
ATAGCATTCTGCGACATGGAGCCATCACAAACGGCATGATGACTGATCGC
AGCGCATCAGCACTGTCGCTGCTTTAATATTTGCCATGGTGAAACGGGGG
CGGAGAGCTGGTCATATTGCCACGTTTAATCCGACCTGGTGAACTCGACC
TAGGATGCTGAACGAACATTCATGAATCCG
UFO01879.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:12:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mob4-RA | 1414 | CG3403-RA | 261..931 | 7..677 | 3355 | 100 | Plus |
| Mob4-RB | 1426 | CG3403-RB | 261..943 | 7..677 | 3225 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:12:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6695891..6696267 | 443..67 | 1885 | 100 | Minus |
| 2R | 25286936 | 2R | 6695597..6695834 | 677..440 | 1190 | 100 | Minus |
| 2R | 25286936 | 2R | 6696339..6696401 | 69..7 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:12:55 has no hits.
UFO01879.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:04:31 Download gff for
UFO01879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mob4-RA | 225..895 | 7..677 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:03 Download gff for
UFO01879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mob4-RA | 261..931 | 7..677 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:34 Download gff for
UFO01879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mob4-RA | 261..931 | 7..677 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:34 Download gff for
UFO01879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6695597..6695831 | 443..677 | 100 | <- | Minus |
| 2R | 6695892..6696265 | 69..442 | 100 | <- | Minus |
| 2R | 6696340..6696401 | 7..68 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:03 Download gff for
UFO01879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2583102..2583336 | 443..677 | 100 | <- | Minus |
| arm_2R | 2583397..2583770 | 69..442 | 100 | <- | Minus |
| arm_2R | 2583845..2583906 | 7..68 | 100 | | Minus |
