UFO01880.5prime Sequence
1128 bp (1006 high quality bases) assembled on 2008-10-31
> UFO01880.5prime
CAGTCGACATGGCTGATGTGGCTGAGCAAAAGAATGAGACCCCTGTTGTC
GAGAAGGTCGCAGCTGAGGAAGTTGATGCTGTGAAGAAAGATGCAGTTGC
CGCCGAGGAGGTAGCAGCTGAGAAGGCGAGCATCACAGAAAACGGTGGCG
CCGAAGAGGAGAGCGTAGCCAAGGAGAACGGAGCCGCCGACAGCAGCGCG
ACCGAGCCCACCGACGCAGTCGATGGTGAAAAGGCGTCTGAGCCCACTGT
TTCTTTTGCCGCCGATAAGGATGAGAAGAAGGACGAGGATAAAAAAGAGG
ATTCCGCTGCCGATGGGGAGGACACCAAAAAAGAGAGCAGCGAAGCTGTT
CTACCTGCTGTCGAGAATGGCTCCGAGGAGGTCACCAACGGTGACTCAAC
AGATGCTCCCGCCATTGAGGCTGTAAAGCGGAAGGTGGATGAGGCTGCAG
CCAAGGCAGATGAGGCCGTCGCCACGCCGGAGAAAAAGGCTAAGCTTGAT
GAGGCCAGCACAAAGGATGAGGTTCAGAATGGGGCCGAGGCTAGCGAAGT
GGCCGCCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAA
GTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGG
AGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCG
GCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTA
CTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCC
GCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGA
CATGGAAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCAT
CAGCACCTTGTCGCCTTGCGTATATATTTGCCCATGGTGAAAACGGGGGC
GAAGAGTGTCCATATTGCCACGTTTAAATCAAACTGTGAACTCACCCAGG
ATGCTGAGACGAAAAACATATCTCAATAAACCCTTTAGGAAATAGCCAGT
TTCACCGTACACGCCCAATCTGGCAATTATGTGTAAACTGCGAATCGTCT
GCATTCACTCAAGGAGAACGTCCAGTTG
UFO01880.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Df31-RB | 1424 | CG2207-RB | 133..681 | 9..557 | 2745 | 100 | Plus |
| Df31-RA | 1532 | CG2207-RA | 241..789 | 9..557 | 2745 | 100 | Plus |
| Df31-RF | 2083 | CG2207-RF | 241..789 | 9..557 | 2745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21627842..21628209 | 402..35 | 1840 | 100 | Minus |
| 2L | 23513712 | 2L | 21627603..21627761 | 557..399 | 795 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:00:49 has no hits.
UFO01880.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:04:30 Download gff for
UFO01880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Df31-RF | 229..789 | 1..562 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:42 Download gff for
UFO01880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Df31-RF | 233..789 | 1..557 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:08 Download gff for
UFO01880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Df31-RF | 233..789 | 1..557 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:08 Download gff for
UFO01880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21627603..21627757 | 403..557 | 100 | <- | Minus |
| 2L | 21627842..21628209 | 35..402 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:42 Download gff for
UFO01880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21627603..21627757 | 403..557 | 100 | <- | Minus |
| arm_2L | 21627842..21628209 | 35..402 | 100 | <- | Minus |
