Clone UFO01881 Report

Search the DGRC for UFO01881

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:18
Well:81
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG12708-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO01881.5prime Sequence

1118 bp (995 high quality bases) assembled on 2008-10-31

> UFO01881.5prime
CAGTCGACATGTTCAAGTGGGCCGTCAACCAGCCACGACCCTCGTACTTG
GCCAGGGATGAGGTGATGGCCACCAGCAGCGAGGCAGTCGGCTCCAGCTA
CAGCGAGTTCCACGCCCTGCGTGGCAAACTCAAGAGGAAGTCGATCGGAG
TGGCGCCAGGCAAGGAGAACCAGCTGACCTCCACGCCACTGCCGGCCAGC
TCCTTGAGCCTCCATGCGCGCACACCACTGCTCAAGGACCTCAGCAACAT
CCTGGCCACGCCGCCATCGGGAGGAGCAAGTGGCGCTAATGGGGCAACTG
GAGGTGTAACTGCTGTTCCCCTGAAGTTCGCCTGCACACTGCCCACCTTC
GAGGCGGAGTACTCGCCCAATGCCGCCATCATTCCTGGCTCCCTGATCGC
CCTGCGCGGCATGGGCATCCCGGACAGCTACTTCGAGAAGCCGCGTTACC
TGGAGCAGAAGCCACTACCACATCCGCATCCGCATCCAGCACCTCCGACC
GGCGAACAGAATACGCTCAGTTCCAGCCAGATGGGCGATGTGACCCTGGA
GCGCATGATCGATGCCATCCTCGAGAGCAACCGCAAGGTGCTGCCCAACG
CCAGACAGCAACAGCACCAGCATCAGCACCGCCAGCCCAGGCAGCATCTC
CGCCAGCGGCACAGGCTCAGGCAGCAGGTGCTCCGGAGCAGCCACGGACA
CGGGCACGGCCCCACCCAGACGCCATCGCCCACCTACCGCCCCGCCTTCG
ATCCGGCCAGCGATCTGTGCGAGTACTGGAAGTCGCCCTCGCGGAGGGAT
TCCCTGCCAGCGGAGGGCTTCGAGGAGCGGGAGGTGCGCTCCCCCGTGCC
CACCGTATCCGAATCGCAGATGCATGCGGCATTCCCTGCAGCTGCGCAAG
CAGCGGGTGGTGCGGCGCAGCGAAAGATCACCACAAAGATCTTCCTCCAG
CGTCAGCAGTCGGCGCAGAAGCTGCTTGCAGCGCCAGGTCCGAATCAATA
GCAGCTCCCGCCAGAAAGATGCGCCAACATCAGGTCGGACAGTGCACAAT
TCCACACGACTGCAACTGAAGAAGAACACTGCAACTGAATCCCGAATGAA
ATTGTGCAAGAACTGAAG

UFO01881.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:18:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG12708-RB 1702 CG12708-RB 372..1423 9..1055 4905 98.3 Plus
CG12708-RA 1586 CG12708-RA 256..1307 9..1055 4905 98.3 Plus
CG15646-RB 1697 CG15646-RB 414..1336 90..996 4015 96.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:18:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15676407..15677445 9..1044 4705 98.4 Plus
X 23542271 X 15668246..15669168 996..90 3815 96.2 Minus
Blast to na_te.dros performed 2014-11-28 22:18:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6794..6893 596..695 148 63.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6851 562..692 146 64.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6731..6827 596..695 141 63 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6773..6857 596..681 139 64 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2318..2383 595..661 134 68.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6783..6889 576..677 134 66.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2312..2416 553..661 120 60.6 Plus
roo 9092 roo DM_ROO 9092bp 1098..1160 576..636 120 71.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2381..2482 605..706 113 59.2 Plus

UFO01881.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:04:29 Download gff for UFO01881.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12708-RB 245..1320 2..1071 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:01 Download gff for UFO01881.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12708-RA 226..1301 2..1071 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:10:36 Download gff for UFO01881.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12708-RA 251..1326 2..1071 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:10:36 Download gff for UFO01881.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15676402..15677477 2..1071 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:01 Download gff for UFO01881.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15570435..15571510 2..1071 97   Plus