UFO01881.5prime Sequence
1118 bp (995 high quality bases) assembled on 2008-10-31
> UFO01881.5prime
CAGTCGACATGTTCAAGTGGGCCGTCAACCAGCCACGACCCTCGTACTTG
GCCAGGGATGAGGTGATGGCCACCAGCAGCGAGGCAGTCGGCTCCAGCTA
CAGCGAGTTCCACGCCCTGCGTGGCAAACTCAAGAGGAAGTCGATCGGAG
TGGCGCCAGGCAAGGAGAACCAGCTGACCTCCACGCCACTGCCGGCCAGC
TCCTTGAGCCTCCATGCGCGCACACCACTGCTCAAGGACCTCAGCAACAT
CCTGGCCACGCCGCCATCGGGAGGAGCAAGTGGCGCTAATGGGGCAACTG
GAGGTGTAACTGCTGTTCCCCTGAAGTTCGCCTGCACACTGCCCACCTTC
GAGGCGGAGTACTCGCCCAATGCCGCCATCATTCCTGGCTCCCTGATCGC
CCTGCGCGGCATGGGCATCCCGGACAGCTACTTCGAGAAGCCGCGTTACC
TGGAGCAGAAGCCACTACCACATCCGCATCCGCATCCAGCACCTCCGACC
GGCGAACAGAATACGCTCAGTTCCAGCCAGATGGGCGATGTGACCCTGGA
GCGCATGATCGATGCCATCCTCGAGAGCAACCGCAAGGTGCTGCCCAACG
CCAGACAGCAACAGCACCAGCATCAGCACCGCCAGCCCAGGCAGCATCTC
CGCCAGCGGCACAGGCTCAGGCAGCAGGTGCTCCGGAGCAGCCACGGACA
CGGGCACGGCCCCACCCAGACGCCATCGCCCACCTACCGCCCCGCCTTCG
ATCCGGCCAGCGATCTGTGCGAGTACTGGAAGTCGCCCTCGCGGAGGGAT
TCCCTGCCAGCGGAGGGCTTCGAGGAGCGGGAGGTGCGCTCCCCCGTGCC
CACCGTATCCGAATCGCAGATGCATGCGGCATTCCCTGCAGCTGCGCAAG
CAGCGGGTGGTGCGGCGCAGCGAAAGATCACCACAAAGATCTTCCTCCAG
CGTCAGCAGTCGGCGCAGAAGCTGCTTGCAGCGCCAGGTCCGAATCAATA
GCAGCTCCCGCCAGAAAGATGCGCCAACATCAGGTCGGACAGTGCACAAT
TCCACACGACTGCAACTGAAGAAGAACACTGCAACTGAATCCCGAATGAA
ATTGTGCAAGAACTGAAG
UFO01881.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:18:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12708-RB | 1702 | CG12708-RB | 372..1423 | 9..1055 | 4905 | 98.3 | Plus |
CG12708-RA | 1586 | CG12708-RA | 256..1307 | 9..1055 | 4905 | 98.3 | Plus |
CG15646-RB | 1697 | CG15646-RB | 414..1336 | 90..996 | 4015 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:18:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15676407..15677445 | 9..1044 | 4705 | 98.4 | Plus |
X | 23542271 | X | 15668246..15669168 | 996..90 | 3815 | 96.2 | Minus |
Blast to na_te.dros performed 2014-11-28 22:18:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..6893 | 596..695 | 148 | 63.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6851 | 562..692 | 146 | 64.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6827 | 596..695 | 141 | 63 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6857 | 596..681 | 139 | 64 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2383 | 595..661 | 134 | 68.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6783..6889 | 576..677 | 134 | 66.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2416 | 553..661 | 120 | 60.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1098..1160 | 576..636 | 120 | 71.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2381..2482 | 605..706 | 113 | 59.2 | Plus |
UFO01881.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:04:29 Download gff for
UFO01881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12708-RB | 245..1320 | 2..1071 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:01 Download gff for
UFO01881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12708-RA | 226..1301 | 2..1071 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:10:36 Download gff for
UFO01881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12708-RA | 251..1326 | 2..1071 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:10:36 Download gff for
UFO01881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15676402..15677477 | 2..1071 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:01 Download gff for
UFO01881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15570435..15571510 | 2..1071 | 97 | | Plus |