UFO01882.5prime Sequence
702 bp (20 high quality bases) assembled on 2008-10-31
> UFO01882.5prime
CAATCCACATGCTCTCATTAAATTTACTCTCCCATCTCTTTAAGCAAAGC
CTTGCGTCTGGCAACATGGCAATTGTCAACACAGCCGGGCTTACGTATTT
CTCTCCCCCTATTAAATACCCTAATGTGGATCACCCGGACAGACCCAAGC
TGAGGGTCATTGAGCGCCATCCCCAGCTGCCGCCGAACCTCCTTCCGCCA
AAGATGCAGAACCGCCTGCGATACATGCGCGGTCAGGAGATGGTGCACAA
CACGCTGCTCCATAAGCAGTACGCATTCGTGGCCACTGGCGGAGGGCGCC
TGCGCTGGGGCCACTACTAAATGATGCGTTTGACCATCGGACGCAAGATG
AACGTCAACACTATGTTCGCCACATGGCGCGTTCCCGCTCCCTGGGAACC
GATCACTAAGAAGGGGCAGGGCCATGGGATGGGCGGCGGAAAGGGAGCCA
TCGACCACTACGTGACCCCCATCAAGGCCGGTCGCGTCATTGGCGAAATA
CCCGGTTAGTGCGAATTCGTTGAGGTCAAGCAGTTCCTGCAGCAGGTGGC
CAACCTCCTGCCCTTCCAGGCCACCGTCGTTTCCCAGGAGATGCTCAACG
AACAGAGCGTCCTTCAGGAGGAACAGACCCGCCGGAATGAGAACCCCTTT
ACCATGAAGTACGTGATCCAGAACAACCTCACCCGCTGCCACCGATGGCT
CT
UFO01882.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL16-RB | 1076 | CG3109-RB | 91..785 | 8..702 | 2800 | 93.5 | Plus |
| mRpL16-RA | 869 | CG3109-RA | 91..785 | 8..702 | 2800 | 93.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1890613..1891191 | 124..702 | 2370 | 94 | Plus |
| X | 23542271 | X | 1890480..1890540 | 60..120 | 245 | 93.4 | Plus |
| X | 23542271 | X | 1890346..1890395 | 8..57 | 205 | 94 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:32:39 has no hits.
UFO01882.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:04:38 Download gff for
UFO01882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL16-RA | 39..742 | 1..702 | 93 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:24 Download gff for
UFO01882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL16-RA | 82..785 | 1..702 | 93 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:01 Download gff for
UFO01882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL16-RA | 82..785 | 1..702 | 93 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:01 Download gff for
UFO01882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1890613..1891191 | 124..702 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:24 Download gff for
UFO01882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1784646..1785224 | 124..702 | 93 | | Plus |
