UFO01885.5prime Sequence
1117 bp (1000 high quality bases) assembled on 2008-10-31
> UFO01885.5prime
CAGTCGACATGGACGCCCCAGCCGAAGGACACGTTGACCCCGAGTCCTGC
AACGAAATCGAGGACGAGAAGTCCGGCTCGGACTGCCAGTCGATGCCCGC
CTACATGAACTCGGTCATGCGGCGACAGTATCTGCAGCAAATGGTCAAGA
TGCTGCCGGCTCCAGTGCAGAATCGGATTGTGTTCCTGAAAAACCTACAG
CTGCAGCACCTGAATATCGAGGCCCAGTTCTTTGAGGACGTCTACAAGCT
GGAGCAGAAGTACCAGGTGCAGTACCAGCCGTTGTTCGATAAGCGCAGGG
AGATCATCGAGGGCAAGGTGGACCCCGCCGAGGAGAAGCCCCAGTGGAAG
GAACCGGAGTCGTCGACCGACAACGAGGCCGATGCCGAGCACTTCCGCGA
GGCCCTGAGCAGTTTGAAAAGTATTCCCAAGGATGCCAAGGGCATTCCCG
GCTTCTGGCTGACGGTGTTCCGCAACACGGCCATAATGTCTGAGATGGTG
CAGCCGCACGACGAGCCCGCCATCCGCAAGCTAATCGATATTTCCATCAA
GTACGACAACGGGCATTCGTACACCTTGGAGTTTCACTTCGACAAGAACG
AGTACTTCTCCAACTCAGTTCTCACAAAGCAGTACGTTTTGAAGTCCACC
GTGGATCCCAACGATCCGTTCGCATTTGAAGGCCCAGAGATCTACAAGTG
CACGGGGTGCACCATTAACTGGGAGAAGAAGATGAACCTTACTGTGAAGA
CCATCCGCAAGAAGCAGAAGCACAAGGAGCGCGGCGCAGTGCGCACCATT
GTGAAGCAGGTTCCGACGGATTCCTTCTTCAATTTCTTCAGCCCACCAGA
GGTCCCGAGCGACCAGGAGGAAGTCGACGACGACTCCCAGCAGATCCTGG
CCACCGACTTCGAAATTGGTCACTTCTTGCGCGCCAGATTATTCCAAAAG
CAGTGCTTTACTACACCTGGCGACATCGTCGACGATGAGACGATGAGGAC
GAGAGGGAGTATGACGAGACGAGAAGATGAGTACGACGACGACGATGCAC
CGCCCACAAAGGCCAATCAGCGGTTCAAGAAGCAGTGGCAGACTGCGATC
AGCAGCTTCCGGAACAT
UFO01885.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nap1-RC | 1376 | CG5330-RC | 125..1211 | 9..1086 | 5095 | 98.5 | Plus |
| Nap1-RB | 1393 | CG5330-RB | 142..1228 | 9..1086 | 5095 | 98.5 | Plus |
| Nap1-RA | 1361 | CG5330-RA | 110..1196 | 9..1086 | 5095 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23906060..23906528 | 563..95 | 2345 | 100 | Minus |
| 2R | 25286936 | 2R | 23905605..23905794 | 893..704 | 950 | 100 | Minus |
| 2R | 25286936 | 2R | 23905855..23905997 | 705..563 | 715 | 100 | Minus |
| 2R | 25286936 | 2R | 23905370..23905545 | 1062..890 | 545 | 93.8 | Minus |
| 2R | 25286936 | 2R | 23906614..23906700 | 95..9 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:29:40 has no hits.
UFO01885.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:04:26 Download gff for
UFO01885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nap1-RA | 130..1219 | 9..1089 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:46 Download gff for
UFO01885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nap1-RA | 110..1199 | 9..1089 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:27 Download gff for
UFO01885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nap1-RA | 110..1199 | 9..1089 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:27 Download gff for
UFO01885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23905856..23905996 | 564..704 | 100 | <- | Minus |
| 2R | 23905378..23905541 | 894..1054 | 95 | <- | Minus |
| 2R | 23905605..23905793 | 705..893 | 100 | <- | Minus |
| 2R | 23906060..23906528 | 95..563 | 100 | <- | Minus |
| 2R | 23906615..23906700 | 9..94 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:46 Download gff for
UFO01885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19794138..19794223 | 9..94 | 100 | | Minus |
| arm_2R | 19792901..19793064 | 894..1054 | 95 | <- | Minus |
| arm_2R | 19793128..19793316 | 705..893 | 100 | <- | Minus |
| arm_2R | 19793379..19793519 | 564..704 | 100 | <- | Minus |
| arm_2R | 19793583..19794051 | 95..563 | 100 | <- | Minus |
