UFO01886.5prime Sequence
1132 bp (1003 high quality bases) assembled on 2008-10-31
> UFO01886.5prime
CAGTCGACATGGCCCTGACGTCGCGCTTCTACAACGAGCGGTATCCGGAG
ATCGAGGATGTCGTTATGGTGAACGTGCTGTCCATCGCCGAGATGGGCGC
CTACGTTCATCTGCTTGAGTACAACAACATCGAGGGCATGATCCTGCTGT
CGGAGCTGTCCCGCCGGCGCATCCGCTCCATCAACAAGCTGATTCGTGTC
GGCAAGACCGAACCGGTGGTGGTTATCCGTGTTGACAAGGAGAAGGGCTA
CATCGATCTGTCGAAGCGTCGCGTTTCGCCCGAAGATGTCGAGAAGTGCA
CCGAGCGCTTCGCTAAGGCCAAGGCCATCAACTCACTGCTCCGCCATGTC
GCCGACATACTCGGCTTCGAGGGCAACGAGAAGCTGGAAGATCTCTACCA
GAAGACCGCCTGGCACTTCGAGAAGAAGTACAACAACAAGACGGTCGCCT
ACGACATCTTCAAGCAATCGGTCACCGATCCCACCGTCTTCGATGAGTGC
AACCTGGAACCGGAGACCAAGGAGGTCCTGTTGAGCAACATCAAGCGGAA
GCTGGTCTCGCCCACTGTCAAGATCCGTGCGGACATCGAGTGCTCCTGCT
ACGGTTACGAGGGCATCGACGCTGTCAAGGCATCGCTCACCAAGGGCCTG
GAGCTGAGCACCGAGGAGCTGCCCATTCGCATCAACCTGATAGCACCGCC
ACTCTATGTAATGACCACATCCACTACCAAGAAGACAGACGGTTTAAAGG
CTCTGGAGGTGGCCATTGAGCACATTCGCGCCAAGACCAGCGAGTACGAT
GGAGAGTTCAAGGTGATCATGGCACCCAAACTGGTTACGGCCATCGACGA
GGCGGATCTGGCCAGACGCCTGGAGCGCGCTGAGGCCGAGAACGCCCAGG
TGGCTGGCGACGATGACGAGGAGGATGGCGCCGACCAGGAGGGCATGCAG
TTCGATCCAGAGATGAGTTCAACCACAGGATCGGGGGCGGTCGTGCGACG
AGAGATGAGGAGGAGAGAGATGCAGCTTCTAGACCATTCGTTTGGCGCCG
GGCTCAGTATGGTCAGATAATTCATAAGTCTATGCATGGCATAATTCCAC
ACTAGCTAGGAATCTGCCATGACTTGGCCTTG
UFO01886.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF-2alpha-RB | 1519 | CG9946-RB | 113..1128 | 7..1015 | 4900 | 99.2 | Plus |
| eIF-2alpha-RA | 1200 | CG9946-RA | 113..1128 | 7..1015 | 4900 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16446178..16446881 | 710..7 | 3490 | 99.7 | Minus |
| X | 23542271 | X | 16445596..16445885 | 990..704 | 1320 | 98.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:34:43 has no hits.
UFO01886.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:04:24 Download gff for
UFO01886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-2alpha-RA | 89..1115 | 1..1025 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:28 Download gff for
UFO01886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-2alpha-RA | 108..1134 | 1..1025 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:05 Download gff for
UFO01886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-2alpha-RA | 108..1134 | 1..1025 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:05 Download gff for
UFO01886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16445561..16445885 | 704..1025 | 96 | <- | Minus |
| X | 16446185..16446886 | 1..703 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:28 Download gff for
UFO01886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16339594..16339918 | 704..1025 | 96 | <- | Minus |
| arm_X | 16340218..16340919 | 1..703 | 99 | | Minus |
