UFO01888.5prime Sequence
1132 bp (1010 high quality bases) assembled on 2008-10-31
> UFO01888.5prime
CAGTCGACATGCAGCAGCGCCGACAGCCGGCGAATGGCAACGGCAGAGGA
GGAGGAACCACCGCCGCCGTCCGTACGGAGGAGCAGCAACAACAGCAGCA
GCCATTGAGTCAGGATGCTGGCGCCAAGGAGGCGGGCAGCACGCCGGGCA
AGGCAACGGGACGCGGCTGCTATTTCTCGCTGGCCTTCTCCATCGGTTCG
ATGGGCCTGGCCTGCGGCAGCCTGTGGCAGATACCGAACAGCAGTGACCG
CATCTCGCTGCAGCGCGGCCTGGTGCTCACCTCGCTGGGATTCATCTATT
TTGTCTCGCTAACGGACTTCTGCAACAAATACCTGCTGGAGACGACGCAT
GGACAGCGCTTTCGTCGCAAGTACCGCCTGATGATGTCCGACGTCCTGGA
GATAACCAACAAAATCGTCTCGGCAATCCAGGCCTCATTCTCCTTCTTCG
TGGGACTCATCGTCTGCAAGTCGACGTGCACCAAATCCTTTGTATATGCA
TCCCACTTCTTGATGGAGGCGTACGGTTGGTTCGGCACTGCTTACTTTAT
GTACGACATCTGGTCGATGTACAAGGTGCACACCCAGAAGATCGCCGACA
AGCTGCACCTGCTGCGCATTACCAAGGGTCAAGGGGCGGTGGTGAGCAAT
GGCCACGCCAATGGCAAGGTCAACGGCAAGTCGGCCAGCGGCAACAACAA
CGGCAGCACTCCAACGAATCTGCACGAGATCTGCGACTACGATGGAGCCT
GTGTCCAGATACCCAAAGGACGGCAGATGGGACTTTCTCAAGTACGTGGT
CACGCACCCGGTCATGATGATACACCATGTCTTCATCGGAACATTTGGAT
TGCTGGTGGTGACGTACATTCGCGGTGGCGGTCACTGCATCTACAGCTAC
ATGTTCATGATGGAGTTCTCCACGCCGTTCGTCTCGTTGCGCAGCATCCT
GAGCACATGCGCTCAGGATTCACGTGTGTACATCGCCACGTCTGCTGATG
CTGCCACCTTCTTCGTGTGCCGCGTCTGCATGTGGCATACTGATGTGGCG
CCTACAGCCTGCCATTGAGCTGCATCCTGTGTCGCATGTGGGGGCCTTGC
CCGAGAGTGCCTCTCACAGACATCGCTATACT
UFO01888.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17841-RA | 2488 | CG17841-RA | 305..1437 | 9..1132 | 5120 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10381659..10382109 | 413..864 | 2210 | 99.8 | Plus |
| X | 23542271 | X | 10368356..10368759 | 9..412 | 2020 | 100 | Plus |
| X | 23542271 | X | 10382180..10382358 | 864..1036 | 620 | 95 | Plus |
Blast to na_te.dros performed 2014-11-28 19:16:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..6854 | 11..102 | 153 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6714..6819 | 7..115 | 122 | 61.8 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 94..189 | 21..115 | 117 | 60.8 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9124..9219 | 21..115 | 117 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2371..2431 | 645..705 | 116 | 65.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2767..2838 | 645..715 | 114 | 63.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2768..2834 | 37..104 | 112 | 66.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1066..1091 | 77..102 | 112 | 92.3 | Plus |
UFO01888.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:05:42 Download gff for
UFO01888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17841-RA | 302..1438 | 1..1132 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:24 Download gff for
UFO01888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17841-RA | 301..1437 | 1..1132 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:01 Download gff for
UFO01888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17841-RA | 301..1437 | 1..1132 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:01 Download gff for
UFO01888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10382181..10382379 | 865..1057 | 95 | -> | Plus |
| X | 10368352..10368759 | 1..412 | 99 | -> | Plus |
| X | 10381659..10382109 | 413..864 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:24 Download gff for
UFO01888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10262385..10262792 | 1..412 | 99 | -> | Plus |
| arm_X | 10275692..10276142 | 413..864 | 99 | -> | Plus |
| arm_X | 10276214..10276412 | 865..1057 | 95 | -> | Plus |
