UFO01890.5prime Sequence
1115 bp (1004 high quality bases) assembled on 2008-10-31
> UFO01890.5prime
CAGTCGACATGTGCGACGAGTCCATTGAAAATGTGGAGCATCAAGACCAC
CATGTGCACTTCGACACGAACACGGTGAAGGATGACTTCGAATCGGACAG
CTGTGTGACATACCAAAGGTCTGGTGACACGATTGTGGTGAGCCTGGGCT
TTCTGCAGATCAGGCATCGCTATCTGATCGAACTGAAGCTGCCGACGTCG
CTATTCGGCGATGCCAAGACGCTGGCCAGCAAATTTGAGCCGGTGATTAG
CGCCACGCCGAGCTTGCACTGCAGGATCACGGAGTTCGAGGGCACCAAGC
ATGATGAGCACGACTTTTTCGAAATGAAAATCGAGTTCTTTGCCTACAAG
GAGAAGCTGTTGCGCGAGGTCCTGCACATTGTCAGCTCATCGAACGCCAA
GGAGCTGCTACAGCTGGTCATAGCCGCTCGGGTGTTGGGCAAGGGCAAGG
GTACTCCTATGCTGCGGACTGGAATCCATTGCATCGGCGTCGAGAGGGAT
GACGATGAGTCGGAGGCGTCGGATTTCGCTGGCTTCGACAGCAAGCCCGC
AAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATA
ATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGG
TCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACC
GAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTA
TCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCA
CTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGC
CATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTG
TCGCCTTGCGTATATATTTGCCCATGGTGAAACGGGGGCGAAGAAGTGTC
CATATGCCACGTTTAATCAAACTGTGAACTCACCCAGGGATGCTGAACGA
AAAACATATCCTCAATAAACCCTTTAGGAATAGCCAGTTTCACCGTAACC
CGCACATCTTGCAAATATGTGTAGAACTGCGAAATCGTTCTGATTCCCTC
GAGCGAAGAAACCGT
UFO01890.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6983-RB | 1740 | CG6983-RB | 193..732 | 9..548 | 2700 | 100 | Plus |
| CG6983-RA | 1302 | CG6983-RA | 193..732 | 9..548 | 2700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8444050..8444557 | 548..41 | 2540 | 100 | Minus |
| 3L | 28110227 | 3L | 8449149..8449185 | 45..9 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:16:19 has no hits.
UFO01890.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:05:39 Download gff for
UFO01890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6983-RA | 181..731 | 1..553 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:18 Download gff for
UFO01890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6983-RA | 186..736 | 1..553 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:52 Download gff for
UFO01890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6983-RA | 186..736 | 1..553 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:52 Download gff for
UFO01890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8444050..8444552 | 46..548 | 100 | <- | Minus |
| 3L | 8449149..8449191 | 1..45 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:18 Download gff for
UFO01890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8437150..8437652 | 46..548 | 100 | <- | Minus |
| arm_3L | 8442249..8442291 | 1..45 | 91 | | Minus |
