UFO01891.5prime Sequence
1127 bp (1019 high quality bases) assembled on 2008-10-31
> UFO01891.5prime
CAGTCGACATGGCTACCGAACGATACAGCTTTTCGTTGACCACGTTCAGT
CCTTCCGGAAAACTCGTCCAACTGGAGTATGCATTGGCGGCCGTATCTGG
CGGAGCTCCCTCCGTGGGCATTATAGCTTCCAACGGCGTCGTCATTGCCA
CAGAGAACAAACACAAGTCACCGCTGTATGAGCAGCACAGTGTACATCGC
GTGGAGATGATCTACAACCACATCGGCATGGTGTACTCGGGAATGGGTCC
GGACTACCGCCTGCTGGTCAAGCAGGCCCGCAAGATCGCCCAGACGTACT
ACCTGACCTACAAGGAGCCGATTCCAGTGTCACAGCTGGTGCAGCGCGTG
GCCACGCTCATGCAGGAGTACACTCAGTCCGGTGGCGTTCGTCCCTTTGG
CGTTTCCCTACTGATCTGCGGCTGGGACAATGATCGTCCGTATCTCTACC
AATCCGATCCTTCGGGCGCCTACTTCGCCTGGAAGGCCACTGCCATGGGC
AAGAACGCAGTGAACGGCAAAACTTTCCTGGAGAAGCGCTACAGCGAAGA
TCTGGAGCTGGACGACGCTGTTCACACCGCCATCCTTACGCTGAAAGAAG
GTTTTGAGGGAAAAATGACTGCCGACAACATTGAGATCGGAATCTGCGAT
CAGAACGGATTCCAGCGTCTGGACCCCGCCTCAATCAAGGACTACTTGGC
CAGCATCCCCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGG
TAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCT
AGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGC
CCGGCGGCAACCGAGCGTTCTGAACAATCCAGATGGAGTTCTGAGGTCAT
TACTGGATCTATCACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCC
CGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTTGCC
GACATGGCAGCCATCACAAACGGCATGATGAACCTGATCGCCAGCGGCAT
CACCCCCTTGTCGCCTTGCGTATATATTTGCCCATGGGTGAACCGGGGCG
AAGAGTGTCCTATGGGCCGTTATCGAA
UFO01891.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosalpha2-RA | 920 | CG5266-RA | 121..822 | 9..710 | 3510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12431743..12432001 | 124..382 | 1295 | 100 | Plus |
| 3R | 32079331 | 3R | 12432286..12432458 | 538..710 | 865 | 100 | Plus |
| 3R | 32079331 | 3R | 12432066..12432222 | 382..538 | 785 | 100 | Plus |
| 3R | 32079331 | 3R | 12431581..12431660 | 47..126 | 400 | 100 | Plus |
| 3R | 32079331 | 3R | 12431441..12431481 | 9..49 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:18:50 has no hits.
UFO01891.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:05:37 Download gff for
UFO01891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pros25-RA | 109..825 | 1..718 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:10 Download gff for
UFO01891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha2-RA | 113..829 | 1..718 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:12 Download gff for
UFO01891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha2-RA | 113..829 | 1..718 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:12 Download gff for
UFO01891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12431433..12431481 | 1..49 | 91 | -> | Plus |
| 3R | 12431584..12431660 | 50..126 | 100 | -> | Plus |
| 3R | 12431746..12432001 | 127..382 | 100 | -> | Plus |
| 3R | 12432067..12432222 | 383..538 | 100 | -> | Plus |
| 3R | 12432287..12432465 | 539..718 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:10 Download gff for
UFO01891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8258009..8258187 | 539..718 | 98 | == | Plus |
| arm_3R | 8257155..8257203 | 1..49 | 91 | -> | Plus |
| arm_3R | 8257306..8257382 | 50..126 | 100 | -> | Plus |
| arm_3R | 8257468..8257723 | 127..382 | 100 | -> | Plus |
| arm_3R | 8257789..8257944 | 383..538 | 100 | -> | Plus |
