UFO01895.5prime Sequence
1095 bp (986 high quality bases) assembled on 2008-10-31
> UFO01895.5prime
CAGTCGACATGAGCAAGAAGCCGACAGCCGGACCGGCGCTCCACAAGGTC
ATAATGGTGGGCAGTGGCGGCGTGGGAAAGTCCGCCCTCACACTGCAGTT
TATGTACGATGAGTTCGTCGAGGACTACGAGCCCACCAAGGCCGATAGCT
ATAGGAAAAAGGTTGTGCTGGACGGCGAGGAAGTACAAATAGATATATTG
GATACGGCTGGCCAGGAGGATTATGCCGCCATCAGAGATAACTACTTTCG
CAGCGGCGAGGGTTTCCTTTGCGTCTTCTCCATCACAGACGACGAAAGCT
TCCAGGCAACCCAGGAATTCAGAGAACAAATCTTGCGGGTGAAGAATGAT
GAGAGCATACCGTTCCTGCTGGTGGGCAACAAGTGCGATCTGAATGATAA
GCGCAAGGTGCCGCTGAGCGAGTGCCAGCTGAGGGCGCAGCAGTGGGCGG
TGCCCTATGTGGAGACCTCGGCTAAAACCCGCGAAAATGTGGACAAGGTA
TTTTTTGATTTGATGCGCGAAATAAGATCACGAAAAACCGAAGATTCGAA
AGCCACGAGCGGGCGTGCTAAAGATAGATGCAAGAAGCGGAGACTTAAGT
GTACCCTACTTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAG
GTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCC
TAGGAGATCCTGGTCATGACTAGTGCTTGTATTCTCACCAATAAAAAACG
CCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTC
ATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACG
CCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGC
CGACATGAGCATCACAACGGCATGATGACCTGATCGCAGCGCATCAGCAC
TTGTCGCTTGCGTATATATTTGCCATGTGAAACGGGGCGAGAGTGTCATA
TGCCACGTTAATCAACTGTGAACTCACCAGGAATGCCTGAAACGAAACAT
ATTCTCATAACCTTAGAAATGGCAAGTTCACGTAACCGCCAACTT
UFO01895.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rala-RC | 2555 | CG2849-RC | 300..903 | 8..611 | 3020 | 100 | Plus |
| Rala-RA | 2377 | CG2849-RA | 496..1099 | 8..611 | 3020 | 100 | Plus |
| Rala-RB | 2057 | CG2849-RB | 300..801 | 8..509 | 2495 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3708742..3708923 | 499..318 | 910 | 100 | Minus |
| X | 23542271 | X | 3709836..3709998 | 322..160 | 815 | 100 | Minus |
| X | 23542271 | X | 3710067..3710222 | 163..8 | 780 | 100 | Minus |
| X | 23542271 | X | 3707378..3707493 | 611..496 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:09:15 has no hits.
UFO01895.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:04:27 Download gff for
UFO01895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rala-RA | 486..1104 | 1..620 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:18:15 Download gff for
UFO01895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rala-RA | 489..1107 | 1..620 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:51:42 Download gff for
UFO01895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rala-RA | 489..1107 | 1..620 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:51:42 Download gff for
UFO01895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3707370..3707491 | 498..620 | 96 | <- | Minus |
| X | 3708744..3708918 | 323..497 | 100 | <- | Minus |
| X | 3709836..3709996 | 162..322 | 100 | <- | Minus |
| X | 3710069..3710225 | 1..161 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:18:15 Download gff for
UFO01895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3601403..3601524 | 498..620 | 96 | <- | Minus |
| arm_X | 3602777..3602951 | 323..497 | 100 | <- | Minus |
| arm_X | 3603869..3604029 | 162..322 | 100 | <- | Minus |
| arm_X | 3604102..3604258 | 1..161 | 97 | | Minus |
