UFO01904.5prime Sequence
1143 bp (1013 high quality bases) assembled on 2008-11-05
> UFO01904.5prime
CAGTCGACATGACCAAGTATAATAGTGGCAGCAGTGAAATGCCTGCGGCT
CAAACCATCAAGCAGGAGTACCACAATGGCTATGGTCAGCCGACACATCC
TGGATACGGATTTAGCGCCTATAGCCAACAGAATCCGATAGCCCATCCCG
GCCAGAATCCACACCAGACACTGCAGAATTTCTTTAGCCGCTTCAATGCC
GTCGGTGATGCGAGTGCGGGAAATGGTGGAGCGGCTTCCATCTCAGCCAA
CGGATCGGGTTCGTCTTGCAACTACAGTCATGCGAATCATAATCCGGTTG
AGCTGGACAAGCCATTGGGCATGAATATGACACCGTCGCCCATCTACACC
ACCGACTACGATGACGAGAACAGCAGTCTCAGCTCCGAGGAGCACGTCCT
GGCGCCCCTCGTCTGCTCCTCCGCCCAATCCTCCAGACCATGCCTCACCT
GGGCCTGCAAGGCGTGCAAAAAGAAGAGCGTCACCGTGGACCGTCGGAAA
GCGGCCACTATGAGGGAACGCCGGAGACTGCGAAAGGTTAACGAGGCCTT
CGAGATCCTCAAGCGACGCACTTCATCCAATCCCAACCAGCGCCTGCCGA
AGGTTGAGATATTGCGCAATGCCATCGAGTATATCGAGAGCCTGGAGGAT
CTGCTACAGGAATCCAGTACCACACGCGATGGCGACAACCTGGCGCCCAG
TTTGAGCGGCAAAAGCTGCCAGTCCGATTATCTGAGCTCCTATGCTGGCG
CTTATCTAGAAGATAAACTTAGTTTTTACAACAAACATATGGAGAAATAT
GACTTTGATGGCAATGCCAATGGCTCCAGTTTGGACTGTCTAAATCTGAT
TGTTCAGAGCATCAATAAGAGCACCACGAGTCCCATTCAAAATAAGCCAC
GCCCTCGCTTCAGATACCCAATCGCCGCCTCATCCGGAGCAACTGCACCC
ACTTCTCTGCACGTGACTTCAAACGGAAGTGCAGCACTGCAAGCTTTCTA
GAACATTCGTTTGGCGCGGCGGGTCCAGGTAAGTGGTTCATATTCATAAT
CATAATCATATCATAATCGACTAGCTAGGAAATCCTGTCATGACTATGCT
GAATTCTTCACATAAGCTGGCGCACGAGCTCTGACATTCGAAT
UFO01904.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:10:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nau-RB | 1520 | CG10250-RB | 402..1385 | 9..988 | 4820 | 99.6 | Plus |
| nau-RA | 1532 | CG10250-RA | 402..1397 | 9..988 | 4690 | 98.4 | Plus |
| CG10300-RA | 1484 | CG10300-RA | 1120..1311 | 988..801 | 860 | 97.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:10:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23717427..23717956 | 538..9 | 2650 | 100 | Minus |
| 3R | 32079331 | 3R | 23712949..23713140 | 988..801 | 760 | 97.9 | Minus |
| 3R | 32079331 | 3R | 23716500..23716625 | 660..535 | 630 | 100 | Minus |
| 3R | 32079331 | 3R | 23716363..23716439 | 734..658 | 385 | 100 | Minus |
| 3R | 32079331 | 3R | 23713208..23713275 | 801..734 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:10:28 has no hits.
UFO01904.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:16:42 Download gff for
UFO01904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nau-RA | 394..1401 | 2..994 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:19:01 Download gff for
UFO01904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nau-RB | 394..1389 | 2..994 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:52:20 Download gff for
UFO01904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nau-RB | 394..1389 | 2..994 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:52:20 Download gff for
UFO01904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23712939..23713139 | 802..996 | 95 | <- | Minus |
| 3R | 23713208..23713274 | 735..801 | 100 | <- | Minus |
| 3R | 23716363..23716437 | 660..734 | 100 | <- | Minus |
| 3R | 23716501..23716623 | 537..659 | 100 | <- | Minus |
| 3R | 23717429..23717964 | 2..536 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:19:01 Download gff for
UFO01904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19538661..19538861 | 802..996 | 95 | <- | Minus |
| arm_3R | 19538930..19538996 | 735..801 | 100 | <- | Minus |
| arm_3R | 19542085..19542159 | 660..734 | 100 | <- | Minus |
| arm_3R | 19542223..19542345 | 537..659 | 100 | <- | Minus |
| arm_3R | 19543151..19543686 | 2..536 | 99 | | Minus |
