UFO01905.5prime Sequence
1083 bp (951 high quality bases) assembled on 2008-11-05
> UFO01905.5prime
CAGTCGACATGGCAATGCTTAATGAGGCCAGCTTGAGTCCTGCGGACGCA
CATGCTCATGCCAACGCCACCACGCCCACGCACAGCAAGGCGGCGGCGAT
GGCCAGTGCCACCACAATGCTGACCACAAAAACGCCGTTTTCCATCGAGC
ACATATTGTTTCAAAACTTAAATAGTGCCAGCAATAACAATAATAGTAGT
GATACCAACGGCATCGCCGCAAACACCAACAACTACGCGCCAAAGAGCAG
CAGAAACGCGGTGAAAAGTGCCAGAAGCGCATTTGCCCACGACAATAATC
CGCACAAACATCCGTCGCAACATTCGCATCCGCCGCAGTCACATCCGCCG
GCGTCCGCATCCGCATCCGCGACGGCTACTGCCCGCAGCAACCAGGCTGC
GTCGGGTTACGCTGGCGAGGATTACGGCAAGTCCATGCACAGCACTCCAC
GGTCCAACCACCACTCGCGACACGGAACTTCCCACTACAACGGAGATCAG
ATTTCGCAGCAGTTGGGATCTGGAGCAGCACAACATCCGCCGGTGCCCAC
GACTCAACCTCAACCTCCGCCTCCGCCGCCCCTGAATGGAGGTAGTGGTG
CATCCAATGGAGTACTCTATCCGAATGCACCCTACACCGATCACGGATTT
CTTCAAATGACCCTCGGATATCTCTCGCCGTCGTCGGGCACCTACAAGTC
CGTGGATCCCTATTTTCTATCACAAGCCAGCCTGTTCGGGGGAGCGCCCT
TCTTCGGAGCGCCTGGCTGTGTGCCGGAACTGGCCCTCGGACTGGGAATG
GGCGTGAATGCCCTGCGCCACTGCCGCCGGAGGAAGGCTCGCACGGTGTT
CAGTGATCCGCAGCTGTCCGGTCTGGAAAAGCGGTTCGAGGGAAAGCGAT
ACCTGTCCACGCCGGAGCGTGTGGAGCTGGCCACCGCCTGGGGACTCACC
GAGACGCAGGTGAAGACTGGTTCCAAACGTCGCCATGAAGCACAAAAGCA
GCTTGCGCCCGCGCGACAATGCCAATGAACGTCGACTTCTTCAGCAGGAA
CCGGGTGCAGCCGGGAGGCCAGTCTCTATCAGG
UFO01905.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bsh-RC | 1503 | CG10604-RC | 139..1202 | 9..1065 | 4925 | 98.1 | Plus |
| bsh-RB | 2012 | CG10604-RB | 139..1202 | 9..1065 | 4925 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19768485..19768929 | 453..9 | 2225 | 100 | Minus |
| 2L | 23513712 | 2L | 19767740..19768015 | 726..451 | 1380 | 100 | Minus |
| 2L | 23513712 | 2L | 19767048..19767352 | 1027..725 | 1215 | 94.8 | Minus |
Blast to na_te.dros performed 2014-11-28 19:21:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6753..6944 | 171..364 | 135 | 57.8 | Plus |
UFO01905.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:16:40 Download gff for
UFO01905.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bsh-RB | 132..1181 | 1..1047 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:40 Download gff for
UFO01905.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bsh-RB | 132..1181 | 1..1047 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:31 Download gff for
UFO01905.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bsh-RB | 132..1181 | 1..1047 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:31 Download gff for
UFO01905.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19767044..19767350 | 727..1035 | 95 | <- | Minus |
| 2L | 19767740..19768014 | 452..726 | 100 | <- | Minus |
| 2L | 19768487..19768936 | 1..451 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:40 Download gff for
UFO01905.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19767044..19767350 | 727..1035 | 95 | <- | Minus |
| arm_2L | 19767740..19768014 | 452..726 | 100 | <- | Minus |
| arm_2L | 19768487..19768936 | 1..451 | 99 | | Minus |
