Clone UFO01906 Report

Search the DGRC for UFO01906

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:19
Well:6
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO01906.5prime Sequence

965 bp (874 high quality bases) assembled on 2008-11-05

> UFO01906.5prime
CAGTCGACATGCTTATAATGGATATACAGACATCGACACATCATATCCAT
GGGCTCGGAACACATGAGCTCCAACATCGTATTTTACATCCACACATTCT
ACATTCAACTCAAGAAGAAACCCTTAATACAAGTACAGGCCAGCTAGAGC
ACGATTCCCAACATCTGCAACAACATCACCTCACTCATCATCAGCAACAG
GACGTTTCACCGACTTTGCACAATTTACAAAACACCCGCACTGGTGATAG
CCTGAGCACTACTATTAATACAAATCAAAATCAACATGGTCATCAACATC
TTTCCGGAAGTAACATGTATACCTCGTCTCAAATGGAAGATAAGTCAAAA
GCGAACAAGTATGATGAGTATTCAAGCCGGACACTGAGCAACATTTCGGA
TGCCAATACGACGCCATCTGCAAACAATTTCATAACACAATCCCAAGGAA
TAGAGTGGATAACAGCCATGAATGATATTCAAAACGGGGCAGAAGACTCA
CACAGTTCGCAGGGCAGTATTTCGGGTGATGGTAAGATATTTCTAGCAAG
CTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATC
ATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCA
TGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAG
CGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCA
ACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCGCCTGCACTCATC
GAGATGTGATCTTAGATCTGCGCTGAGCACACAACGCTGTGACTGATCGC
ACGCTCGACTGCCCTGTTAATGCTGTGAACGGGCAACTGCGATGCCTATG
CTGATCATACGCACGTGAGTCATCAGACCCAACGATCACTGCTCATCACT
GTGTAGCGCGTGTGC

UFO01906.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:47
Subject Length Description Subject Range Query Range Score Percent Strand
sv-RH 4501 CG11049-RH 107..631 9..533 2625 100 Plus
sv-RG 2257 CG11049-RG 293..817 9..533 2625 100 Plus
sv-RF 2749 CG11049-RF 293..817 9..533 2625 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:45
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 1092286..1092628 9..351 1715 100 Plus
4 1348131 4 1095574..1095716 350..492 715 100 Plus
4 1348131 4 1095791..1095846 490..545 280 100 Plus
Blast to na_te.dros performed 2014-11-28 19:00:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1486..1582 109..202 126 61.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2319..2386 130..202 110 65.8 Plus

UFO01906.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:16:39 Download gff for UFO01906.5prime
Subject Subject Range Query Range Percent Splice Strand
sv-RC 273..797 9..533 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:03 Download gff for UFO01906.5prime
Subject Subject Range Query Range Percent Splice Strand
sv-RF 293..817 9..533 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:44:47 Download gff for UFO01906.5prime
Subject Subject Range Query Range Percent Splice Strand
sv-RF 293..817 9..533 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:44:47 Download gff for UFO01906.5prime
Subject Subject Range Query Range Percent Splice Strand
4 1092286..1092628 9..351 100 -> Plus
4 1095576..1095716 352..492 100 -> Plus
4 1095794..1095846 493..545 100 == Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:03 Download gff for UFO01906.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 1116420..1116472 493..545 100 == Plus
arm_4 1112912..1113254 9..351 100 -> Plus
arm_4 1116202..1116342 352..492 100 -> Plus