UFO01906.5prime Sequence
965 bp (874 high quality bases) assembled on 2008-11-05
> UFO01906.5prime
CAGTCGACATGCTTATAATGGATATACAGACATCGACACATCATATCCAT
GGGCTCGGAACACATGAGCTCCAACATCGTATTTTACATCCACACATTCT
ACATTCAACTCAAGAAGAAACCCTTAATACAAGTACAGGCCAGCTAGAGC
ACGATTCCCAACATCTGCAACAACATCACCTCACTCATCATCAGCAACAG
GACGTTTCACCGACTTTGCACAATTTACAAAACACCCGCACTGGTGATAG
CCTGAGCACTACTATTAATACAAATCAAAATCAACATGGTCATCAACATC
TTTCCGGAAGTAACATGTATACCTCGTCTCAAATGGAAGATAAGTCAAAA
GCGAACAAGTATGATGAGTATTCAAGCCGGACACTGAGCAACATTTCGGA
TGCCAATACGACGCCATCTGCAAACAATTTCATAACACAATCCCAAGGAA
TAGAGTGGATAACAGCCATGAATGATATTCAAAACGGGGCAGAAGACTCA
CACAGTTCGCAGGGCAGTATTTCGGGTGATGGTAAGATATTTCTAGCAAG
CTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATC
ATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCA
TGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAG
CGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCA
ACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCGCCTGCACTCATC
GAGATGTGATCTTAGATCTGCGCTGAGCACACAACGCTGTGACTGATCGC
ACGCTCGACTGCCCTGTTAATGCTGTGAACGGGCAACTGCGATGCCTATG
CTGATCATACGCACGTGAGTCATCAGACCCAACGATCACTGCTCATCACT
GTGTAGCGCGTGTGC
UFO01906.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sv-RH | 4501 | CG11049-RH | 107..631 | 9..533 | 2625 | 100 | Plus |
sv-RG | 2257 | CG11049-RG | 293..817 | 9..533 | 2625 | 100 | Plus |
sv-RF | 2749 | CG11049-RF | 293..817 | 9..533 | 2625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 1092286..1092628 | 9..351 | 1715 | 100 | Plus |
4 | 1348131 | 4 | 1095574..1095716 | 350..492 | 715 | 100 | Plus |
4 | 1348131 | 4 | 1095791..1095846 | 490..545 | 280 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:00:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1486..1582 | 109..202 | 126 | 61.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2386 | 130..202 | 110 | 65.8 | Plus |
UFO01906.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:16:39 Download gff for
UFO01906.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sv-RC | 273..797 | 9..533 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:03 Download gff for
UFO01906.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sv-RF | 293..817 | 9..533 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:44:47 Download gff for
UFO01906.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sv-RF | 293..817 | 9..533 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:44:47 Download gff for
UFO01906.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 1092286..1092628 | 9..351 | 100 | -> | Plus |
4 | 1095576..1095716 | 352..492 | 100 | -> | Plus |
4 | 1095794..1095846 | 493..545 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:03 Download gff for
UFO01906.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 1116420..1116472 | 493..545 | 100 | == | Plus |
arm_4 | 1112912..1113254 | 9..351 | 100 | -> | Plus |
arm_4 | 1116202..1116342 | 352..492 | 100 | -> | Plus |