UFO01907.5prime Sequence
927 bp (768 high quality bases) assembled on 2008-11-05
> UFO01907.5prime
CAGTCGACATGGATCCAGCACTGCTTCGCGAACGCGAGGCCTTCAAAAAG
CGGGCGATGGCCACGCCCACCGTGGAAAAGAAGTCCAAGCCCGATAGACC
AGCTCCACCGCCGCCTAGCGATGATTCCAGGCGCAAAATGCGCCCGCCCA
ATGCTCCCAGGCTGGATGCCACAACATACAAGACCATGTCCGGCAGTTCC
CAGTACCGCTTTGGAGTGCTGGCCAAGATTGTGAAATTCATGCGCACACG
TCACCAGGACGGCGACGACCATCCCCTGACCATCGATGAGATTCTGGACG
AGACCAACCAGCTGGACATTGGGCAATCCGTTAAGAATTGGCTTGCTAGC
GAGGCTCTGCACAACAATCCCAAGGTGGAAGCCAGTCCATGTGGCACCAA
GTTCAGTTTCAAGCCAGTCTACAAGATCAAGGATGGCAAAACGCTGATGC
GTCTGCTCAAGCAACATGATTTAAAGGGCCTGGGCGGCATTTTGCTGGAC
GATGTCCAGGAATCTCTACCACACTGCGAAAAGGTGCTGAAGAACCGATC
AGCCGAAATACTTTTTGTTGTTAGACCCATTGACAAAAAGAAGATTTTAT
TTTACAATGACAGGACTGCTAATTTTTCGGTGGACGACGAGTTCCAGAAG
CTATGGCGCTCGGCTACGGTCGATGCAATGGACGACGCAGTTGCGAGACT
CGAGAGAGGCATCGCTCATGCAGACATGCCTCAGAACATTCCAGCCAGAG
CGCACAGAGCGCAGTCAGAGCAAGCACACTTGCACTCGAGCACAGTACAT
ACTAGGGACACGAGTCAACTCTGCCGCAGATGCACACACACACAACAACG
TGATGCCAACGCATACATATGAGAGACCAGTACGCCTGGTCAACAGTGCT
TGGAATGATGTAGCGTTATGCTACGCT
UFO01907.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TfIIEbeta-RA | 1049 | CG1276-RA | 108..792 | 4..688 | 3410 | 99.9 | Plus |
| TfIIEbeta-RB | 1121 | CG1276-RB | 247..864 | 71..688 | 3090 | 100 | Plus |
| TfIIEbeta-RB | 1121 | CG1276-RB | 108..174 | 4..70 | 320 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4287687..4287981 | 339..633 | 1475 | 100 | Plus |
| 3L | 28110227 | 3L | 4287464..4287626 | 176..338 | 815 | 100 | Plus |
| 3L | 28110227 | 3L | 4287284..4287388 | 71..175 | 525 | 100 | Plus |
| 3L | 28110227 | 3L | 4287145..4287211 | 4..70 | 320 | 98.5 | Plus |
| 3L | 28110227 | 3L | 4288033..4288092 | 629..688 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:40:38 has no hits.
UFO01907.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:16:37 Download gff for
UFO01907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIEbeta-RA | 105..805 | 1..697 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:31 Download gff for
UFO01907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIEbeta-RA | 105..805 | 1..697 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:14:34 Download gff for
UFO01907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIEbeta-RA | 105..805 | 1..697 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:14:34 Download gff for
UFO01907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4287142..4287211 | 1..70 | 97 | -> | Plus |
| 3L | 4287284..4287388 | 71..175 | 100 | -> | Plus |
| 3L | 4287464..4287626 | 176..338 | 100 | -> | Plus |
| 3L | 4287687..4287977 | 339..629 | 100 | -> | Plus |
| 3L | 4288034..4288105 | 630..697 | 94 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:31 Download gff for
UFO01907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4287142..4287211 | 1..70 | 97 | -> | Plus |
| arm_3L | 4287284..4287388 | 71..175 | 100 | -> | Plus |
| arm_3L | 4287464..4287626 | 176..338 | 100 | -> | Plus |
| arm_3L | 4287687..4287977 | 339..629 | 100 | -> | Plus |
| arm_3L | 4288034..4288105 | 630..697 | 94 | == | Plus |
