UFO01909.5prime Sequence
886 bp (680 high quality bases) assembled on 2008-11-05
> UFO01909.5prime
CAGTCGACATGCAGTCGTCGGAGGGTTCACCAGACATGATGGATCAGAAA
TACAACAGCGTGCGTCTTTCGCCAGCGGCATCGAGTCGCATTCTATACCA
TGTGCCCTGCAAAGTCTGCAGAGATCACAGCTCCGGCAAGCATTACGGCA
TCTACGCCTGTGATGGCTGCGCCGGATTCTTCAAGAGGAGCATTCGGAGA
TCCCGGCAGTATGTGTGCAAGTCGCAGAAGCAGGGACTCTGTGTGGTGGA
CAAGACGCACAGGAACCAATGTAGGGCTTGCCGACTGAGGAAGTGCTTTG
AGGTCGGAATGAACAAGGATGCAGTGCAGCACGAGCGGGGACCGCGGAAC
TCCACTCTGCGTCGCCACATGGCCATGTACAAGGATGCCATGATGGGCGC
CGGCGAGATGCCACAAATACCCGCCGAAATTCTGATGAACACGGCTGCCT
TGACCGGCTTTCCTGGAGTACCGATGCCCATGCCTGGCCTGCCCCAGAGG
GCTGGTCATCATCCTGCTCACATGGCTGCCTTCCAGCCGCCCACCATCGG
CTGCCGCTGTCTGGACTTATCCGTGCCACGAGTGCCCCATCACCCGGTGC
ACCAAGGACACCACGGTTTTCTTCTCGCCACCGCCGCCTAAATGAATGCC
CTGGCCACTCGGGCCCTGCCCCCACTCCTCCGTGTGCAGTACCTCAGACG
GCGACCATAACTATGTAGCTCGCTCCATGCTCGCCGCGTGAGTCGAGTTC
TCGCTGCATCAGCTATCCATGGCTAATCAAGACGATTGTGACGAGCCTCG
AGTACATGCTTATCGCACATCAGTTCCTCATCCTGATCCAGTCATACAGC
GCACCGCGACGTGCGATGCAACAGAACACCAGAATG
UFO01909.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:15:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tll-RA | 1965 | CG1378-RA | 233..907 | 9..682 | 3245 | 99.1 | Plus |
| dsf-RB | 3537 | CG9019-RB | 289..379 | 105..195 | 215 | 82.4 | Plus |
| dsf-RA | 3042 | CG9019-RA | 289..379 | 105..195 | 215 | 82.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:15:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30852744..30853332 | 85..673 | 2740 | 99.2 | Plus |
| 3R | 32079331 | 3R | 30852547..30852624 | 9..86 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:15:33 has no hits.
UFO01909.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:16:36 Download gff for
UFO01909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tll-RA | 226..917 | 1..689 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:47 Download gff for
UFO01909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tll-RA | 226..917 | 1..689 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:58 Download gff for
UFO01909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tll-RA | 226..917 | 1..689 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:58 Download gff for
UFO01909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30852540..30852622 | 1..84 | 96 | -> | Plus |
| 3R | 30852744..30853352 | 85..689 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:47 Download gff for
UFO01909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26678262..26678344 | 1..84 | 96 | -> | Plus |
| arm_3R | 26678466..26679074 | 85..689 | 98 | | Plus |
