UFO01913.5prime Sequence
1106 bp (1011 high quality bases) assembled on 2008-11-05
> UFO01913.5prime
CAGTCGACATGCATCGGATACATGACGACGAGTATTCCGAGGATGCCAAG
GAATCGGACTTTAAGAGTTCGATTCAGAAGGAGATATCAGTGAAGTCGAG
ACACCAAATTTCCATACCAGACATATGCTCAGATGCTGTTAAGAACAATT
GTTTTCCGCCGACTGGCTTTCTCAATAACTCGATCACCTTTGCCTCACAT
GTAGTTAAGTGCAGCTCACCGGCCTCGAGCATCGATGAATCCTCAACGGC
GGCCCAGCAGCACGAATCCAATCCACACATGCATATACAGGGTCAGCATA
TGATGGCTCCCGTTCCCGATCTGGGTTTCTACAATGTGCCCGAGTTCATA
TCCGAGCAGGAGAAGCTCATGTTCTCCGATGCAGAGAGATTCTTGCGGTC
GAAGGATAATGAGGTGTGCAACAATGATTTCAGCTATATGCACGATGAGT
TCGCCATGCGGAAGTACTATCATCCGTTATTTGCTCATGGCATATGCCGT
TGGCCTGGTTGCGAAATGGATTTGGAAGACATCACATCGTTTGTCAAGCA
TCTGAATACGGAACATGGTTTGGACGATCGATCAACAGCACAGGCACGGG
TTCAAATGCAAGTTGTCTCCCAGCTGGAATCCCACCTGCAAAAAGAACGA
GATCGCTTGCAGGCAATGATGCATCACTTGTATTTGTCCAAGCAGCTTTT
GTCTCCCACCAAAATCGACAGGAAGGACGTGCCCGGAAGAGAGGGAAAGT
TTTGCCGGAGTCCGCTTACCGTAAATAGCATAGGCCGACCCATCCGACAA
ACAAATTCACCGAGTCCTCTGAATCTTCCAATGGTTTATTCCACCAACTT
GTGCTCGATCAAAAGAGAAACCACGACAAAATACATTTTCCATAAATGGG
GGATTACCCTATATGCTTGAAAGAGCAGTCTTGATGTGCACAGAAATCCA
TCGAAACAGAGAGTTTTATAAGAATGCTGATGTACGACGCTTTACTATGC
TCCCTCATAAGACAGCTATATGACTCCCCTGACAGCAGTTACCTAACGAA
TCTACACTGTGAACCATTTTGCTACTCGGCCACGCAGCCTACTGAAAAAC
GATCGG
UFO01913.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| FoxP-RC | 3359 | CG43067-RC | 1245..2312 | 7..1056 | 4905 | 98.2 | Plus |
| FoxP-RD | 2832 | CG43067-RD | 1245..2312 | 7..1056 | 4905 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9728894..9729435 | 548..7 | 2710 | 100 | Minus |
| 3R | 32079331 | 3R | 9728658..9728836 | 726..548 | 895 | 100 | Minus |
| 3R | 32079331 | 3R | 9728424..9728605 | 902..723 | 795 | 98.4 | Minus |
| 3R | 32079331 | 3R | 9728191..9728238 | 988..941 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:00:23 has no hits.
UFO01913.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:09:43 Download gff for
UFO01913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16899-RB | 9..1076 | 7..1056 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:48 Download gff for
UFO01913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FoxP-RD | 9..1076 | 7..1056 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:44:37 Download gff for
UFO01913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FoxP-RD | 1245..2312 | 7..1056 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:44:37 Download gff for
UFO01913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9728159..9728235 | 944..1015 | 93 | <- | Minus |
| 3R | 9728321..9728365 | 902..943 | 93 | <- | Minus |
| 3R | 9728425..9728602 | 726..901 | 98 | <- | Minus |
| 3R | 9728659..9728836 | 548..725 | 100 | <- | Minus |
| 3R | 9728895..9729435 | 7..547 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:48 Download gff for
UFO01913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5553881..5553957 | 944..1015 | 93 | <- | Minus |
| arm_3R | 5554043..5554087 | 902..943 | 93 | <- | Minus |
| arm_3R | 5554147..5554324 | 726..901 | 98 | <- | Minus |
| arm_3R | 5554381..5554558 | 548..725 | 100 | <- | Minus |
| arm_3R | 5554617..5555157 | 7..547 | 100 | | Minus |
