UFO01914.5prime Sequence
1095 bp (959 high quality bases) assembled on 2008-11-05
> UFO01914.5prime
CAGTCGACATGTCGCAGACATGCCAGAGAACGGAAACACTGACGATTGAG
GCTCTAGATTTCATCTACGAGGACGAAATGGAATACTTGCACCTAAAACA
AGCGCCCAGAAAGGAGGAGCAAGTCAAGGCGGTGAAGATAAAGCGACTGA
CTTGCAACATAAACGGCTGCACTTACTCCACGGACCGGAGAAGAGACTTG
AGGCGCCACAGGCGGTCGCAAAAGCACATGCTGCTGGAGTCCTGCTCTGA
CTCCGAGTCTGAGGTGGAATCGTCACTGTTCTCGTGCAACGTCTGCGGCT
ACAAGACCGCCAAACGGTATTGCTTCGACCGGCACAAGGAGTCGAGGCGC
CACATAATGAAGGAGCAGGAGGAGTGCGAGAAGCTGATGGACGAGGCCGA
GAGGGCGGAACCGGCGGTAAAACGCATAAAAAGAGTAGAGGAGCCAGCGC
CCGCGGATGCGGAGAAAACACGATACACGGAAGACATCCTGACCACGTGC
ACGCCGTGTGACTACAGCACCACTCGAAAATCTCAATTCGAGATGCAAGC
AAAAAGCCAGGCGAACATCGAGGTCGTGCAAAGCCAGCTGGAGGCTAATG
AATACATACAGTATCTGCCCCAGGAGCAGGAACAGATGGTGGAGCTATCT
GGGGAGTCTGGGGAGACCGAGGACGAATACCTCGCCTACAAGAAGGAGTG
CAGGTGCACCCTGGAGTGCAAGCCCTGCGAATACAGAACGGCCAGGAGAT
TCTGCTTCGTTCGGCACATGCGATCGGCAAGGCATCTGGCCAAGATTCAA
GCTGACCTTGATGGTCTGGAGGAAACTGAAGCTCTTGAGCCAGTAGAATA
CTTGGAAGCGGAAAATGAGCTGGAGGAGATTGATCACAGAGAGGAGAGAA
ATTTTGTGAGGAGCTTGATATGGATTGTTATGGAGAGCCAGATGTTGTGG
AGATTTACAGATATAGATAGCAAACGACTGAAGAGATCATCTAGTGGAGA
TCGACGAGGTGTTCAAATAGATCCCGCTTGAAATGATAGAATATACACTG
CCGAGAAACGTTACGAAGGAGATCTGTACTGACCCGAGAAAGGTT
UFO01914.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17186-RA | 1482 | CG17186-RA | 98..1189 | 9..1084 | 4940 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19876309..19877282 | 1047..85 | 4255 | 97.9 | Minus |
| 3R | 32079331 | 3R | 19877342..19877417 | 84..9 | 365 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:03:23 has no hits.
UFO01914.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:09:41 Download gff for
UFO01914.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17186-RA | 22..1113 | 9..1084 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:24:25 Download gff for
UFO01914.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17186-RA | 98..1189 | 9..1084 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:35 Download gff for
UFO01914.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17186-RA | 98..1189 | 9..1084 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:35 Download gff for
UFO01914.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19876267..19877282 | 85..1084 | 97 | <- | Minus |
| 3R | 19877342..19877417 | 9..84 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:24:25 Download gff for
UFO01914.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15701989..15703004 | 85..1084 | 97 | <- | Minus |
| arm_3R | 15703064..15703139 | 9..84 | 98 | | Minus |
