UFO01915.5prime Sequence
1115 bp (1020 high quality bases) assembled on 2008-11-05
> UFO01915.5prime
CAGTCGACATGTGCTACGTGAATAGATTTTGCCATTACTTTGCCAATCGC
TACCCGAAGAACTTTGTGAGGATAGTGCATCCACTTTCGATAGTTTTCGT
CCTGTGCAGCACAGCTTTCTTCTTCTCACTGCAGATGTTTTACATTGCGC
CCAAAGTGTTTGGCGACATTGCTTACAAGCTCTACTGGATATTGGTCACC
TTCATAACGCACAACATACTTGGTAACATGCTGGCCTGCTATATGACTAG
CTCATCGGTAAACACCTTGTCCAAGGACTCCCGATGCCCGAATCCAGAGG
ATGAGCCCCTGTGGCACTATTGCGAATCGTGTAAAAAGCTGAGATCGCCA
CGATCCTGGCACTGCGTTTTGTGCAACACCTGCATTTTGAGACGGGACCA
CCACTGTATATTCACGGGCACTTGCATTGGACACAATAATCAACGCTTTT
TCTTCTGGTTCACATTTTATTTAACGCTCGGCTTAGTCACAAGCTTTGCA
ACATTTTGTATGTTTATCCTGCAGAATGGCGGTAACTTCATGAGTCTCTC
GTCTGTGATTTTTAATTTAATAACTAGGACTTTTTTCCAAAATTATACTG
GCAATACTTTTGAGACCATTGCCTTCCTCTTGAATATAAGCGCCAGCTAT
ATGCCTGCCTTTATGTTGGCATATCAAATGCAGATTTTAAGCCAAAACTC
TACCTACTATAATATTTTTGATTGCACCTACGATCTGGGTTTCCGAAAGA
ACTGCCAGACAATAATGGGCCAACGAGGACTTTGGACTTTTATATCGCCC
TTGCTGAAGAGTCCTTTGCCCCATGACGGTGCACATTGGCAGATGAAGCA
GTCTCACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAA
GTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGG
AGATCCTGGTCATGACTAGTGCTTGGAATCCTCACCATAAAAAACGCCCG
GGCGGCAACCGAACGTTCTGAACAAATTCCAGAATGGGAGTTCTGAGTCA
TTTACTGATCTATCACAGGAGTCCAAGCGAGCTTCGATATTCAATACGCC
CCGCCTGCCACTAAT
UFO01915.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17195-RA | 923 | CG17195-RA | 18..866 | 9..857 | 4245 | 100 | Plus |
| CG17196-RC | 881 | CG17196-RC | 257..426 | 303..472 | 325 | 80.1 | Plus |
| CG17196-RB | 875 | CG17196-RB | 251..420 | 303..472 | 325 | 80.1 | Plus |
| CG17196-RC | 881 | CG17196-RC | 587..759 | 654..826 | 295 | 78.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25776333..25777181 | 857..9 | 4245 | 100 | Minus |
| 3R | 32079331 | 3R | 25775743..25775912 | 472..303 | 310 | 78.8 | Minus |
| 3R | 32079331 | 3R | 25775410..25775582 | 826..654 | 295 | 78 | Minus |
| 3R | 32079331 | 3R | 25774821..25774936 | 463..348 | 220 | 79.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:39:56 has no hits.
UFO01915.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:09:40 Download gff for
UFO01915.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17195-RA | 18..872 | 9..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:14 Download gff for
UFO01915.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17195-RA | 18..872 | 9..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:14:07 Download gff for
UFO01915.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17195-RA | 18..872 | 9..865 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:14:07 Download gff for
UFO01915.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25776327..25777181 | 9..865 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:14 Download gff for
UFO01915.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21602049..21602903 | 9..865 | 99 | | Minus |
