UFO01916.5prime Sequence
1100 bp (984 high quality bases) assembled on 2008-11-05
> UFO01916.5prime
CAGTCGACATGTGTTTGATATGGGCCTGCACCAAGTACTTGGCGCGTCGA
AATCCAAAGATATTCGTTCGAATCTCCCATCCGACCGCAGTACTATTCGT
AATCGTGACAACGATCTTTTTTGTGGTCCTGCAAATGTTTTACGTGGTAC
CCCAATTGTTTGATGTTCAAGGATTCATGTACAAGCTCGGCTGGCTAGTG
GCAATCTTTATAACATATAATATCTTTGGCAATATGCTTGCGTGTCATAT
CACAAGCACTTCGGTGGAGAGCCTGCCAAAGGATCGGCAAATTCCGGAGC
CGGAAGAGGAGCACCAGTGGCATTACTGCGATGTTTGTGAAAAACTAATG
CCTCCAAGATCCTGGCACTGTATATTGTGCAAGTGCTGCATTCTGAAGCG
GGACCGCCACTGCATTTTCACTGCCAGTTGCGTCGGACACAATAATCAGA
GATACTTTTTCTGGTTCACCCTCTTCATGGCTTTGGGAACTGGTGTGGCC
TTGGCTACCCATATTATTGCCACCCTAAAGTATTTTAGCTATTCGGACCT
GATATTCCTAAATATCCCTAGGGATAACTTACCTCCATTTTGGCTGGTCA
TCACTCTTATACTAAACACCTACGTATTTGCAGCCCCTGTATCTTCGGTG
CTTATGCAATTATCTGTACTTAAAAATAATGGCACTTTGCATAAGTTTTA
CAGTGATACCTACGATCTGGGCTTGTGGGAGAATTTCAAGCTGATTTTGG
GCGGAAAAGGCTTTTGGACTTTCCTCTCACCCACCGTTAAGAGTCCTCTG
CCCCATGATGGTGCCCAGTGGAAGATCAAACGTGTTCAGCATCATTCACC
AAAATTACAGTTTCTCCGTGTATCCGATGCAAGCTTTCTAGACCATTCGT
TTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATATC
ATAATCACACTAGCCTAGGAGATCCTGGTCATGACTGTGCTTGGATTCCT
CACCAATAAAAAACGCCCGCGCACGAGCGTTCTGAACAATTCGAATGGGT
TCTGAGTCATACTGGATCTATCAAGGGATCAAGCGAGCTCGATTCCATTA
UFO01916.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17197-RB | 1958 | CG17197-RB | 89..958 | 9..878 | 4350 | 100 | Plus |
| CG17198-RB | 1958 | CG17198-RB | 89..958 | 9..878 | 4350 | 100 | Plus |
| CG17196-RC | 881 | CG17196-RC | 221..412 | 273..464 | 465 | 82.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25774458..25775281 | 832..9 | 4120 | 100 | Minus |
| 3R | 32079331 | 3R | 25775757..25775948 | 464..273 | 465 | 82.8 | Minus |
| 3R | 32079331 | 3R | 25774334..25774380 | 878..832 | 235 | 100 | Minus |
| 3R | 32079331 | 3R | 25776727..25776842 | 469..354 | 220 | 79.3 | Minus |
| 3R | 32079331 | 3R | 25777733..25777835 | 451..349 | 215 | 80.6 | Minus |
| 3L | 28110227 | 3L | 16861157..16861246 | 357..446 | 210 | 82.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:42:32 has no hits.
UFO01916.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:09:38 Download gff for
UFO01916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17197-RB | 89..958 | 9..878 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:22 Download gff for
UFO01916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17197-RB | 89..958 | 9..878 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:26:28 Download gff for
UFO01916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17198-RB | 89..958 | 9..878 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:26:28 Download gff for
UFO01916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25774334..25774379 | 833..878 | 100 | <- | Minus |
| 3R | 25774458..25775281 | 9..832 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:22 Download gff for
UFO01916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21600056..21600101 | 833..878 | 100 | <- | Minus |
| arm_3R | 21600180..21601003 | 9..832 | 100 | | Minus |
