UFO01917.5prime Sequence
1108 bp (993 high quality bases) assembled on 2008-11-05
> UFO01917.5prime
CAGTCGACATGAAAATTTCTCATGTATTTGTACAGCTTCGGGGCATCATG
CAATCACAAGTTCAAATGCAGACCATCAACATCCCAAGACGCGTGGGGGC
CATCAAATCCTGGACAGATATCATGGGAGTATCCATAAATGTCTGCATAA
TCTTGTTTTTCTACTTCTTCGAAGCTTTCTACGTAATGCCACAGTTTTTG
GGATTGTTTGGACAGGCGGTTCATTTTTTAGTCACCACTTGGATTGTCTA
CAATATTCTGGAAAACTTAAGGCTGTGCGTCACGACGTTGAACACTGTGG
ACTCTTTGCCGCCGCAAATGCAGCAGCCAATGAAAGGTGAAGAGCACCTG
TGGCATTTTTGCAAAATATGCCAAAGGAATGTACCGCCAAGGTCCTGGCA
CTGCAACATCTGTGATGCGTGCATTCTGAAACGCGATCACCACTGCAATT
TTGTGGGCAACTGCGTGGGACACAATAATCAGCGATATTTCATATGGTTC
TCATTTTACGCGGCCATCGGTAGCGCAGTGGCCTTATTTGATAACCTCAT
GTTGGCCCATAAGCACGGTGTTGGATTTTTTGATTTAGTCAAAGCCAATT
ACATTATTTTTAATGCTTACATGAATCCTGGTAGAAAAGAATTAGTGATA
TTCTATCGAATAGTCAGTGTCTTAGGTGTCAACATATTCGCCGTTCTCTT
TCCAGCAGCACTGTTTTGCACCCAAGTAGTGACGGTCATCAAAAACTCAG
TAATGCACGATTATTCTGATCGAACCTATGACCTTGGATTAGGGAATAAT
TTGACCCTGATCCTGGGAAGTCGGCGATTATGGACTTGCCTATCGCCAAA
TATCAAAAGTCCCCTGCCCCACAATGGCACCCGATGGAAATCGAAGCGTG
CCGTCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGT
GGTCATATCATAATTCGTATCATAATCATATCACACTAGCTTAGAGATCC
TGGTCATGAACTAGTGCTGATCTCACAAATAAAACGCCCGCGCACCGAGC
GTTCTGAACAAATCGAATGGAGTTCTGTAGTCATACTGATCTATCAACAG
GATTCAAG
UFO01917.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17197-RB | 1958 | CG17197-RB | 961..1857 | 9..905 | 4470 | 99.9 | Plus |
| CG17198-RB | 1958 | CG17198-RB | 961..1857 | 9..905 | 4470 | 99.9 | Plus |
| CG17198-RA | 1066 | CG17198-RA | 69..965 | 9..905 | 4470 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25773435..25774331 | 905..9 | 4470 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:00:42 has no hits.
UFO01917.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:16:33 Download gff for
UFO01917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17198-RA | 69..965 | 9..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:01 Download gff for
UFO01917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17198-RA | 69..965 | 9..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:44:46 Download gff for
UFO01917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17198-RA | 69..965 | 9..905 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:44:46 Download gff for
UFO01917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25773435..25774331 | 9..905 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:01 Download gff for
UFO01917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21599157..21600053 | 9..905 | 99 | | Minus |
