UFO01918.5prime Sequence
1038 bp (396 high quality bases) assembled on 2008-11-05
> UFO01918.5prime
CAATCGACATGGACTATAATATCCACAAAATATGCAGAGTTTGCCTGGAG
GAACTACTTCCTGTAACTTCGATATATAGTACAGACTTTGCTATGATGCC
CTCCGTAATGTTGATGCAATGCGCTAAAATAAGAGTTTTTAAAACCGATG
GCCTACCTTCGGTGATCTGCAACAACTGTATTTACCGGCTGGGGGTGGCC
TTCCACTTCAAGCAGGAATGCGAAAACAGTGATCTCCGACTGCGACAATA
TCTGGGCATTCTGGAATCCTGGCGCCAGGATGCGGCCACCAATACGGACT
TTGTGGAGAAGCCGTTGCTTCCGCAGCGCGATAGCGATGAAGAGGAACCC
GTGGATGCCAAAGTGAGCAAGAGGCGGTCGCGCTATCAAAGGAAGCCGCC
GGAAGAGCACAAAAAACGGGGGCCCAAACCTGTGCCAAAAATGCCCCACA
CCTGCTACAAGTGCCACAAAAGCTTTAAGTGCATTGCCCAATTAACACAG
CATATAAGAACACATACCGGCGAGAAACCCTACCAATGCAGCTTTTGTAT
CCAGAGATTCGCACAAAAGTACAATCTTAAAGTCCACGAAAGAACGCACA
CGGGCGACAAGCCTTTTCAGTGTGAGATCTGCTCCAAGCAGTTTTCCGCG
TTGGGCAATTTCCAGGCGCACCAGAAGATTCATTTACGAGTGCGGGATCA
GGTATGCTCGCTATGTCAGAAAGGTTTCTACACCGCCGGTGATCTCTCCA
AGCACATGATAACCCATACGGGCATCAAAAACCATCACTGCGATGTCTGC
GGCAAGGCTTTCAGCACGCGAAGAGATATGCGGACTCATAAATTGAAGCT
TCATCCTCTGGAGTCCAGTACAAACCATGATATAGTGGACGATGATGATG
ATGAGCTATAGACACGGATCCCGTGGGTCTGGACATCCTTCGATCACGTC
CACTTCAAGTGACGCGGAATGCGACAAGGCATTTGATACGGCGGACAGAC
CTACGTCTACATCGTTCGCACACATGCGGGCGAATAAA
UFO01918.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17328-RA | 1496 | CG17328-RA | 96..1122 | 7..1037 | 4695 | 97.4 | Plus |
| CG17328-RB | 1346 | CG17328-RB | 64..972 | 125..1037 | 4075 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16300493..16301384 | 135..1029 | 3930 | 97.2 | Plus |
| 2L | 23513712 | 2L | 16300309..16300438 | 7..136 | 635 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:36:02 has no hits.
UFO01918.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:16:31 Download gff for
UFO01918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17328-RA | 50..1081 | 1..1035 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:18 Download gff for
UFO01918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17328-RA | 89..1120 | 1..1035 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:51 Download gff for
UFO01918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17328-RA | 89..1120 | 1..1035 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:51 Download gff for
UFO01918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16300302..16300436 | 1..134 | 96 | -> | Plus |
| 2L | 16300493..16301389 | 135..1035 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:18 Download gff for
UFO01918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16300302..16300436 | 1..134 | 96 | -> | Plus |
| arm_2L | 16300493..16301389 | 135..1035 | 97 | | Plus |
